Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5e10
         (236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   1.3  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    24   3.1  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    24   3.1  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    24   3.1  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    23   4.1  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    23   4.1  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    23   5.4  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    22   9.4  

>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
 Frame = -3

Query: 153 FLFIYVTVHSDLINNRANVDMI-------SSIRMR*ARENIECLVCLVHSVVLWSF 7
           FL++Y+++  +  ++ AN+          S IR++ A   I+C VCL+ S    SF
Sbjct: 376 FLYLYLSIARESADDFANITKAVDPSLFESCIRVQNAPSLIKCGVCLIISSTTPSF 431


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 45  NIQCFPGLISYECWKSYPRWLC 110
           +IQCF      E  K  P W+C
Sbjct: 323 HIQCFDASAFLEMNKQTPSWMC 344


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 45  NIQCFPGLISYECWKSYPR 101
           NI  FPG++  + W S+ R
Sbjct: 205 NIPIFPGIMPIQAWDSFIR 223


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 40  YQTFNVFPGLSHTNAGNHIHVGSVIDEIRVHXDV 141
           +QT N    L H +    I  G ++DE +VH DV
Sbjct: 500 FQTENAPHSLYHMD----IEYGKIVDEWKVHDDV 529


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 63  RENIECLVCLVHS 25
           R+NIE L CLVH+
Sbjct: 158 RKNIEKLACLVHN 170


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +3

Query: 42  PN-IQCFPGLISYECWKS 92
           PN ++C PG + YE W S
Sbjct: 380 PNYVECKPGYVLYEPWYS 397


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 177 INKSKXVCFLFIYVTVHSDLINNRANVDMISSIRM 73
           IN     C++    +V  + IN  +   M SS+RM
Sbjct: 742 INSGSKWCYVDFNTSVFFEAINGNSISGMYSSVRM 776


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 48  CLVCLVHSVVLWSFFQ 1
           C +CL+  + LW F++
Sbjct: 144 CAICLMIFISLWYFYE 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 796,072
Number of Sequences: 5004
Number of extensions: 11378
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)