Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5e10
         (236 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1229 + 25412692-25413102,25413252-25413425,25413538-254136...    29   0.70 
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873...    27   2.8  

>08_02_1229 +
           25412692-25413102,25413252-25413425,25413538-25413636,
           25413679-25413764,25413897-25414035,25414198-25414290
          Length = 333

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 33  LNIPNIQCFPGLISYECWKSYPRW 104
           L  PN Q +PG+     W  YP+W
Sbjct: 259 LGTPNEQVWPGVSKLPNWHEYPQW 282


>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
            19387454-19388884,19388953-19389118,19392035-19392114,
            19392393-19392462,19392550-19392761,19392837-19392890,
            19393471-19393623,19393715-19393930,19394029-19394248,
            19394332-19394399,19394510-19394643,19394755-19394854,
            19394943-19395421,19395506-19395699,19396270-19396355,
            19396364-19396444,19396842-19397023,19397305-19397346,
            19398247-19398558,19399374-19399434,19399435-19399617,
            19399744-19399863,19400380-19401051,19402597-19402668,
            19402742-19402865,19403563-19403651,19405023-19405097
          Length = 2170

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 96   DMISSIRMR*ARENIECLVCLVHSVVLW 13
            DM+    +R A E IEC V L+  + +W
Sbjct: 1177 DMLRIFIVRIASEKIECAVVLLRPIFIW 1204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,573,984
Number of Sequences: 37544
Number of extensions: 60474
Number of successful extensions: 136
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)