Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5e10
         (236 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   2.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   2.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   3.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    19   8.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   8.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 2.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 141 YVTVHSDLINN 109
           YVTVH D+I++
Sbjct: 473 YVTVHGDVISH 483


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 2.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 141 YVTVHSDLINN 109
           YVTVH D+I++
Sbjct: 473 YVTVHGDVISH 483


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 2.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 58  FPGLSHTNAGNHI 96
           +PGL H N G +I
Sbjct: 752 WPGLEHANIGPYI 764


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 54  CFPGLISYECWKSYPRW 104
           CFP L+ ++  +S+P +
Sbjct: 197 CFPPLVGWKDKRSHPAY 213


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 37  FSAQRCFMEFFS 2
           F  Q CFM+F S
Sbjct: 154 FDEQTCFMKFGS 165


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 37  FSAQRCFMEFFS 2
           F  Q CFM+F S
Sbjct: 154 FDQQTCFMKFGS 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,765
Number of Sequences: 438
Number of extensions: 824
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)