Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5e09
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    28   1.5  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    27   2.5  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   3.4  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   3.4  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    26   4.4  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    26   4.4  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   7.8  

>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = +1

Query: 394 VNRHLWSGDG---LQLLRRILEPRDTLGRLQIRRFSGEHKQLRELP--QHRVPG-QEVVR 555
           V+ +LW G     L + +R    R+  GR+ +R   G HKQ   L   + +VPG   V+R
Sbjct: 28  VSDYLWKGKPFRPLTVAKRKKGGRNETGRITVRHQGGGHKQRIRLVDFERKVPGVHRVIR 87

Query: 556 CD 561
            +
Sbjct: 88  IE 89


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 363 LIHVYIL*AESIRDKLIQFSRQRQRRFLMHHVVTILCLAKKRLISKLNIS 214
           LI  Y   A  I      FS ++QR  L+H +    CL  K+++S  N+S
Sbjct: 179 LIFSYCYDASYIEKLPFAFSYRKQRHTLIHDLPNT-CLRFKKILSPRNVS 227


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -1

Query: 527 CCGSSRNCLCSPENLRICSRPRVSRGSSILRSSC 426
           CC S +   CS E    CS  + S  S   +S C
Sbjct: 247 CCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCC 280


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 132 SLI*ACHYR*QILSSLQILFTSINHFNADEALI-MYNVQIK 13
           SL  AC Y    L S Q+L + I+H   D+ L+ M N+ I+
Sbjct: 33  SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIR 73


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 503 LCSPENLRICSRPRVSRGSSILRSSCRPSPLHK 405
           L  P N  IC R R+ RG  ++    R  P+H+
Sbjct: 477 LLHPRN-PICVRQRIGRGGRLMLDRTRALPVHR 508


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 124 NETHITLLRVLFVLGITIGSQNIDMNQDWLANIEF 228
           NE  I+++  L V+G  I + NI + +DW A + F
Sbjct: 210 NEPVISVVLQLAVIGQRIPNSNISLPRDWEAPLFF 244


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 545 RLFVVITKSLFCPPDLKFFNR-ENRPDLPSL 634
           R+ + + ++LFC PDL   +   N  D+PS+
Sbjct: 360 RMRLSLARALFCQPDLLLLDEPSNMLDVPSI 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,233
Number of Sequences: 5004
Number of extensions: 61090
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)