Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5e09
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0742 + 6262311-6262509,6263505-6263622,6263981-6264042,626... 31 0.65
09_02_0318 - 7191763-7191879,7192375-7192494,7192568-7192666,719... 29 3.5
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 4.6
08_02_0313 - 15659600-15659716,15660376-15660495,15660581-156606... 28 6.0
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793... 28 6.0
04_04_0703 + 27398358-27398466,27398549-27398859,27399044-273991... 28 6.0
08_02_0929 + 22694917-22695072,22695399-22695781,22698637-226987... 28 8.0
05_04_0188 - 18883979-18884250,18885046-18885666,18885762-188858... 28 8.0
>11_01_0742 +
6262311-6262509,6263505-6263622,6263981-6264042,
6264139-6264191
Length = 143
Score = 31.5 bits (68), Expect = 0.65
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 467 DGYRFVGFQENISNYENYHSIVFPVRRLFVVITKSLFCPPDLKFFNR 607
DGY+ VG + N+ + NY S+ RR+ +T + FCP D N+
Sbjct: 34 DGYK-VGRKINLRAHRNYDSL----RRVLTKMTHNFFCPADYSSTNK 75
>09_02_0318 -
7191763-7191879,7192375-7192494,7192568-7192666,
7192846-7192957,7193058-7193161,7193341-7193520,
7193611-7193880,7194364-7194660,7195283-7195477
Length = 497
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/71 (21%), Positives = 34/71 (47%)
Frame = +1
Query: 295 SLAGELNQFVPDALGSQNIDMNQDWLANIEPEAVNRHLWSGDGLQLLRRILEPRDTLGRL 474
++ G N+ + L +Q N +W +AV ++LW + ++ ++ D L R+
Sbjct: 138 NIGGYKNEGFVEVLAAQQSPENPNWFQGTA-DAVRQYLWLFEEHNVMEFLILAGDHLYRM 196
Query: 475 QIRRFSGEHKQ 507
++F H++
Sbjct: 197 DYQKFIQAHRE 207
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 523 QHRVPGQEVVRCDNEVPVLPAGPQVLQSREQAGPALP 633
QH + ++ + NE+P LP GP L P LP
Sbjct: 1107 QHEIDREQALADQNELPPLPDGPPPLPLDAPPPPPLP 1143
>08_02_0313 -
15659600-15659716,15660376-15660495,15660581-15660679,
15660802-15660913,15661025-15661128,15661316-15661495,
15661612-15661881,15662529-15662825,15663432-15663677
Length = 514
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/71 (21%), Positives = 33/71 (46%)
Frame = +1
Query: 295 SLAGELNQFVPDALGSQNIDMNQDWLANIEPEAVNRHLWSGDGLQLLRRILEPRDTLGRL 474
++ G N+ + L +Q N +W +AV ++LW + ++ ++ D L R+
Sbjct: 155 NIGGYKNEGFVEVLAAQQSPDNPNWFQGTA-DAVRQYLWLFEEHNVMEFLILAGDHLYRM 213
Query: 475 QIRRFSGEHKQ 507
+F H++
Sbjct: 214 DYEKFIQAHRE 224
>06_02_0251 -
13478902-13478952,13478989-13479055,13479168-13479379,
13480144-13481540,13481574-13482432,13482537-13482836
Length = 961
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 481 RRFSGEHKQLRELPQHRVPGQEVVRC---DNEVPVLPAGPQVLQ 603
RRF+G ++ LP R+ Q R + P LPA PQVL+
Sbjct: 60 RRFAGARCEVALLPARRISAQPRRRNALREKASPPLPADPQVLE 103
>04_04_0703 +
27398358-27398466,27398549-27398859,27399044-27399109,
27399196-27399258,27399304-27399444,27399535-27399612,
27399688-27399738,27399829-27399863,27399982-27400090,
27400235-27400441
Length = 389
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 536 GTRCCGSSRNCLCSPENLRICSRPRVSRGSSILRSSCR 423
G R GS NC CS + R+ + + R S +RS+ R
Sbjct: 21 GRRRAGSFLNCSCSSKEYRVSASYSIGRMLSGVRSAAR 58
>08_02_0929 +
22694917-22695072,22695399-22695781,22698637-22698769,
22698870-22699312,22699786-22699864
Length = 397
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 337 GSQNIDMNQDWLANIEPEAVNRHLWSGDGLQLLRRILEPRDTLGRLQIRRFSGE-HKQLR 513
GS++ D ++W+A +EP + L +G L+RI R+ + Q +R+ E ++++
Sbjct: 143 GSED-DEAKEWVAQVEPGVLITFLSLPEGGNDLKRIRFSREIFNKWQAQRWWAENYEKVM 201
Query: 514 EL 519
EL
Sbjct: 202 EL 203
>05_04_0188 -
18883979-18884250,18885046-18885666,18885762-18885887,
18886007-18886265
Length = 425
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 473 SRPRVSRGSSILRSSCRPSPLHK 405
++P VSR SS +R S PSP HK
Sbjct: 15 AKPPVSRSSSWIRRSPPPSPPHK 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,843,412
Number of Sequences: 37544
Number of extensions: 403530
Number of successful extensions: 959
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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