Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5e09
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6794| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_7783| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               28   6.2  
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               28   6.2  
SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5)            28   8.1  
SB_14623| Best HMM Match : BDHCT (HMM E-Value=7.9)                     28   8.1  
SB_24799| Best HMM Match : Integrase_Zn (HMM E-Value=7.2)              28   8.1  
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)                 28   8.1  

>SB_6794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +1

Query: 412  SGDGLQLLRRILEPRDTLGRLQIRRFSGEHKQLRELPQHRVPGQEVVRCDNEVPVLPA-- 585
            +G G  L   ++    TLG++ +R   G+  + R+LP      Q+V +C N  P++ A  
Sbjct: 876  NGGGENLEGALVIGNPTLGQVMVR---GKVTRPRDLPGALKEAQDVAKCFNATPLVQARA 932

Query: 586  -GPQVLQ 603
              P VLQ
Sbjct: 933  TRPLVLQ 939


>SB_7783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 595 LEVRRAEQGLRYHNEQPPDREHD 527
           +E RR  QG+  HNE P +  HD
Sbjct: 217 IEPRRVTQGIDSHNELPMESSHD 239


>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 267

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 503 SNYENYHSIVFPVRRLFVVITKSLFCPPDLKFFNRE 610
           SNYE +  +  P R   +++  S F PP   F + E
Sbjct: 188 SNYERFRVLASPSRYPTLMVASSTFWPPSYSFKDEE 223


>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 494

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 503 SNYENYHSIVFPVRRLFVVITKSLFCPPDLKFFNRE 610
           SNYE +  +  P R   +++  S F PP   F + E
Sbjct: 188 SNYERFRVLASPSRYPTLMVASSTFWPPSYSFKDEE 223


>SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5)
          Length = 565

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 43  FICIEMINRCKQNLKRR*NLSSIMAGLNETHITLLR 150
           + C E +    QN     +LS  MAG+N+T+IT+L+
Sbjct: 3   YACDEELLLFVQNTLMNDSLSLDMAGINKTYITILK 38


>SB_14623| Best HMM Match : BDHCT (HMM E-Value=7.9)
          Length = 441

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = -3

Query: 387 RFNISQPILIHVYIL*AESIRDKLIQFSRQRQRRFLMH 274
           + ++ +PIL+HV +     + +K +++ R+ +RR LMH
Sbjct: 219 KVDVRKPILLHVSLSEDHELTEKELKYERKARRR-LMH 255


>SB_24799| Best HMM Match : Integrase_Zn (HMM E-Value=7.2)
          Length = 128

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 43  FICIEMINRCKQNLKRR*NLSSIMAGLNETHITLLR 150
           + C E +    QN     +LS  MAG+N+T+IT+L+
Sbjct: 3   YACDEELLLFVQNTLMNDSLSLDMAGINKTYITILK 38


>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
          Length = 1197

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 58  MINRCKQNLKRR*NLSSIMAGLNETHITLLR 150
           ++  C ++  +R  LS  MAG+NET+IT+L+
Sbjct: 91  VVTICTKHSDKR-QLSLDMAGINETYITILK 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,634,942
Number of Sequences: 59808
Number of extensions: 466692
Number of successful extensions: 949
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)