Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5e09
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40797-9|AAK95870.1|  349|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z99288-3|CAB16546.1|  353|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z93385-9|CAB07642.1|  843|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81083-7|CAB03105.1|  843|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U40797-9|AAK95870.1|  349|Caenorhabditis elegans Hypothetical
           protein C28C12.12 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 518 SSRNCLCSPENLRICSRPRVSRGSSILRSSCRPSPLHK 405
           ++++CL + EN    ++P+V  GS+  + S R  PL K
Sbjct: 287 NTKDCLLALENYYTLNKPKVDNGSNAKQLSVRIRPLIK 324


>Z99288-3|CAB16546.1|  353|Caenorhabditis elegans Hypothetical
           protein ZK262.3 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 368 GWLILNRKPSTVTYGVGMACSYFEGYLNHVIPSDGYRFVGFQENISNYENY 520
           GW  L  KPS+  YG+G+  +YF     H      +++V    +IS Y NY
Sbjct: 112 GWTTL--KPSSDFYGMGLVNTYFRS--GH---EKTWQYVQDALSISQYRNY 155


>Z93385-9|CAB07642.1|  843|Caenorhabditis elegans Hypothetical
           protein F44F1.7 protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 454 RDTLGRLQIRRFSGEHKQLRELPQHRVPGQEVVRCDN 564
           +D  GR++  + +G H    ELP  +V     +RC+N
Sbjct: 800 KDVNGRIKKEQLNGLHNGYMELPSAKVYTLYAMRCNN 836


>Z81083-7|CAB03105.1|  843|Caenorhabditis elegans Hypothetical
           protein F44F1.7 protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 454 RDTLGRLQIRRFSGEHKQLRELPQHRVPGQEVVRCDN 564
           +D  GR++  + +G H    ELP  +V     +RC+N
Sbjct: 800 KDVNGRIKKEQLNGLHNGYMELPSAKVYTLYAMRCNN 836


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,943,453
Number of Sequences: 27780
Number of extensions: 349612
Number of successful extensions: 764
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)