Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5e06
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22859| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      29   4.2  
SB_13951| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)                    28   7.3  
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   7.3  
SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)         28   7.3  
SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_46944| Best HMM Match : Myc-LZ (HMM E-Value=9.2)                    28   9.6  
SB_12619| Best HMM Match : DUF837 (HMM E-Value=4.9)                    28   9.6  
SB_52587| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2)            28   9.6  
SB_52548| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_50379| Best HMM Match : Myc-LZ (HMM E-Value=9.2)                    28   9.6  
SB_7558| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2)                 28   9.6  

>SB_22859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1108

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 482 FVQIFFVDSSNSFFQFGHVVLVREPHQV*SH-VLLQPRTDVRVGKGI 345
           F+++FF D S  F    H  LV E   +  H V+++P+  VRVG  +
Sbjct: 529 FIRVFFADFSKGFDLVDHNALVNEMKLLNVHNVIIRPQR-VRVGNAL 574


>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 270  EMSRKKMKRFQLPNLPRWWQAKVIQYAFAHPHVRARLEKHMGSNLVRLTDKNYMTELEER 449
            E+S +KMK +      + +    +++   HP   A +E  M +  VR  +K Y T L  R
Sbjct: 1786 ELSEEKMKEYMKALKTKKFSK--LEFCLRHPFTIALVEGEMSAEEVRKYEKRYETALASR 1843


>SB_13951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 363 HVRARLEKHMGSNLVRLTD 419
           H++ARL KH G NL+  TD
Sbjct: 338 HLKARLVKHFGENLISSTD 356


>SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)
          Length = 832

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
 Frame = +3

Query: 369 RARLEKHMGSNLVRLTD----KNYMTELEERIRAVNEENLNKRISSRVLDEMERLKRLIL 536
           R + EKH+   L RL +    +      E+RIR  N+    +R+    +  MERL+R  L
Sbjct: 242 RLKHEKHL-RRLKRLREQWGRRQRQLAREKRIRRENKRKERERLRRERVKLMERLRRRKL 300

Query: 537 VGKTPLKECPPELFHHPVFVFWRMVNREVARASKKRADAYYRKLKASQKFDQSMD 701
                +++   E       +  R +  E  R + KRA   + KL    +  Q M+
Sbjct: 301 ERARRIRK---ERMKRLQMMKLRKILLERKRRAAKRARIRHEKLMRKLRLQQKME 352


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/66 (22%), Positives = 34/66 (51%)
 Frame = +3

Query: 363 HVRARLEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKRISSRVLDEMERLKRLILVG 542
           H ++    H G +++ + D ++ ++ E  + A  E  + KR++    + +   +RL  V 
Sbjct: 327 HAKSLSYVHKGQSVMSVLDNSFGSQEEIVVEAKKEAEVIKRVNELRKEGLWSTRRLPKVQ 386

Query: 543 KTPLKE 560
           +TP K+
Sbjct: 387 ETPRKK 392


>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
          Length = 2435

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 462 NEENLNKRISSRVLDEMERLKRLILVGKTPLKECPPE 572
           N+ENL+++ S  + D  E +K   L+ +   + CPPE
Sbjct: 435 NKENLSRKKSKSLDDIHEEIKFEQLIRRARSESCPPE 471


>SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1079

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 390 CASPAAHGRAGGQRHIVSLLPAT 322
           C SP   GRAG +  + S+LP+T
Sbjct: 589 CISPRVKGRAGHKEKVFSVLPST 611


>SB_46944| Best HMM Match : Myc-LZ (HMM E-Value=9.2)
          Length = 76

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 372 ARLEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKR 485
           A++ K MGSN+   + +N + +  +RIR   ++N  KR
Sbjct: 29  AQVHKFMGSNMREKSQRNQLLKKLKRIRNRYKDNTRKR 66


>SB_12619| Best HMM Match : DUF837 (HMM E-Value=4.9)
          Length = 192

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 372 ARLEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKR 485
           A++ K MGSN+   + +N + +  +RIR   ++N  KR
Sbjct: 145 AQVHKFMGSNMREKSQRNQLLKKLKRIRNRYKDNTRKR 182


>SB_52587| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2)
          Length = 237

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/104 (20%), Positives = 40/104 (38%)
 Frame = +3

Query: 243 EGEDETGEGEMSRKKMKRFQLPNLPRWWQAKVIQYAFAHPHVRARLEKHMGSNLVRLTDK 422
           E   E  E E+   + +  Q+    RWW      +      VRA   K    N  R    
Sbjct: 39  EARQELKERELEEARARAAQMEKTMRWWSDCTANWREKWGKVRAERNKAREDN--RQLKL 96

Query: 423 NYMTELEERIRAVNEENLNKRISSRVLDEMERLKRLILVGKTPL 554
               + ++ +    E      +++R+  ++++L+R +  GK  L
Sbjct: 97  KIEAQAKDIVTLKRERQEALEVNARLERDIDKLERELKRGKRVL 140


>SB_52548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 372 ARLEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKR 485
           A++ K MGSN+   + +N + +  +RIR   ++N  KR
Sbjct: 23  AQVHKFMGSNMREKSQRNQLLKKLKRIRNRYKDNTRKR 60


>SB_50379| Best HMM Match : Myc-LZ (HMM E-Value=9.2)
          Length = 77

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 372 ARLEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKR 485
           A++ K MGSN+   + +N + +  +RIR   ++N  KR
Sbjct: 30  AQVHKFMGSNMREKSQRNQLLKKLKRIRNRYKDNTRKR 67


>SB_7558| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2)
          Length = 299

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 372 ARLEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKR 485
           A++ K MGSN+   + +N + +  +RIR   ++N  KR
Sbjct: 252 AQVHKFMGSNMREKSQRNQLLKKLKRIRNRYKDNTRKR 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,665,867
Number of Sequences: 59808
Number of extensions: 399886
Number of successful extensions: 990
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)