Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5e06
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-6|AAB65325.1|  258|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode ast...    29   4.8  
Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>AF016423-6|AAB65325.1|  258|Caenorhabditis elegans Hypothetical
           protein F40A3.6 protein.
          Length = 258

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
 Frame = +3

Query: 354 AHPHVRARLEKHMGSNLVRLTDK---NYMTELEERIRAVNE 467
           +HP+VR++  + +GSN V+LT +    +++++EE +  V +
Sbjct: 214 SHPYVRSQDSRIIGSNFVQLTSRPKDKFISKIEETLAMVRD 254


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = +3

Query: 378  LEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKRISSRVLD 506
            +EK + + ++ L D+N   ELEER++ + EE L+++   + +D
Sbjct: 1247 IEKVLNNRILSLEDQNL--ELEERLQEMEEELLDEKNKKKEVD 1287


>AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode
           astacin protease protein32 protein.
          Length = 651

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 270 EMSRKKMKRFQLPNLPRWWQAKVIQYAF 353
           + S+ + K+ Q+ NL ++W  KV+ Y F
Sbjct: 194 QSSKSRRKKRQIDNLAQFWPGKVVYYYF 221


>Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical
           protein C17H1.9 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
 Frame = +3

Query: 225 RVKIQVEGEDETGEGEMSRKKMKRFQLPNLPRWWQAKVIQYAFAHPHVRARLEKHMGSNL 404
           RV+ ++  E    +  ++ K+ K  +  N+ R W + V +   A    R  +EK    + 
Sbjct: 30  RVQDKITDEKTQHQARIAEKERKHRE--NMLRQWNSSVAERNAAEEIHRKSVEKFNEEH- 86

Query: 405 VRLTDKNYMTELEERIRAVN---EENLNKRISSRVLDEMERLKRLI 533
                K YM +LE+++  +N   E+++ +    RV  E +R + L+
Sbjct: 87  -----KTYMAKLEKQLEKINEKGEQDVKEVEQQRVKLEEQRTEDLV 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,772,497
Number of Sequences: 27780
Number of extensions: 317068
Number of successful extensions: 957
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)