Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5e04
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 29 0.96
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c... 27 3.9
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 27 3.9
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 26 5.1
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 26 5.1
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 26 6.8
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 6.8
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 9.0
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 9.0
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 9.0
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 28.7 bits (61), Expect = 0.96
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 356 LEYSSYFRNIQTVMNYIYIGTF 291
L S++FRNI T++ + + GTF
Sbjct: 114 LHQSNFFRNIGTILTFAFAGTF 135
>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 169
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +3
Query: 267 KCKMKLHTERTYVYIIHDSLNVSKIRRI 350
KC M+++ + Y+ I+ S+N+ K++ I
Sbjct: 130 KCAMEVNIKTNYIVILLTSINLKKLKMI 157
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 548 APQCGWRYSESWHSKLELDDI 610
AP W SWHS+LELD I
Sbjct: 771 APSNSW--FNSWHSRLELDSI 789
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 533 EVGCTAPQCGWRYSESWHSKLELDDIR-NWVKVDGNA 640
EV P CG S+H K++ D I ++V +D NA
Sbjct: 167 EVEVITPSCGCSPENSFHLKIDNDKISPSYVYMDPNA 203
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 29 ISLNQIVFAELHNYNFSSFFRTGYYNGIITNTFLQV*NDYVYVYGG 166
ISLNQ + H Y+FSS ++ II N Q+ +D + + G
Sbjct: 305 ISLNQKLCGYAHLYSFSSVKSVVHWLQIIKNCTFQLYDDDMALLAG 350
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 2 NFPFAFWQRISLNQIVFAELHNYNFSSFFRTGYY 103
+F FW ++VF E+H F+S++ G Y
Sbjct: 69 SFITRFWNLNLPGEVVFDEVHFGKFASYYLQGKY 102
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 406 NNNLPSYVDEHEEVMIH--ETLGN 471
NNN+ VDEHEE + ETLGN
Sbjct: 1719 NNNMFDLVDEHEERPKNRKETLGN 1742
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -2
Query: 366 LVESRIFFLFSKHSNCHELYIHRYVQYVVS 277
++ SRIF L +H Y+++Y+ Y+++
Sbjct: 492 VIASRIFELGMRHFGDVPAYVYKYLSYLIA 521
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 620 PNSEYHLAPTYCASFLSNATHTGVRCNPLPKYT 522
P+S + PT A ++ + T ++ NP+P Y+
Sbjct: 94 PSSAQSVPPTSSAETTADNSDTEMKLNPIPAYS 126
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -1
Query: 379 LRMLVSRISNILLIFETFKLS*IIYT*VRSVCSFILHFPSNITFSHYKNLIN 224
LR LVS +L F T + + T + V S L S++ +H+KN++N
Sbjct: 553 LRSLVSCKQVDVLRFVTSQYLEVFGTCLTKVLSGSLCIRSDVDMTHFKNILN 604
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,014
Number of Sequences: 5004
Number of extensions: 75010
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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