Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5e04
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46934| Best HMM Match : MORN (HMM E-Value=0)                        29   3.1  
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)                   29   4.1  
SB_58242| Best HMM Match : PUCC (HMM E-Value=0.14)                     29   5.4  
SB_48608| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_49706| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_46934| Best HMM Match : MORN (HMM E-Value=0)
          Length = 391

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 542 CTAPQCGWRYSESWHSKLELDDIRNW 619
           CT P+   RY  SWH+  EL  +  W
Sbjct: 29  CTGPKGQARYEGSWHNGFELSGVYVW 54


>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
          Length = 236

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/80 (27%), Positives = 36/80 (45%)
 Frame = -2

Query: 525 HTFFTVIYLAQRLQNSLHIS*CFMYHNFFMFIHVTRQIIV*QQYCSIPTYECLLVESRIF 346
           HT     Y++   +++LH++  +M H      HVTR       Y S  T   L V     
Sbjct: 59  HTLHVTRYMSHATRHTLHVT-RYMSHATCHRQHVTR-------YMSHATCHTLHVTGN-- 108

Query: 345 FLFSKHSNCHELYIHRYVQY 286
              + H+ CH L++ RY+ +
Sbjct: 109 ---TSHATCHTLHVTRYMSH 125



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = -2

Query: 510 VIYLAQRLQNSLHIS*CFMYHNFFMFIHVTRQIIV*QQYCSIPTYECLLVESRIFFLFSK 331
           +I+   +L N  H +   ++   +M  H TRQ +   +Y S  T   L V        + 
Sbjct: 1   MIFEVAKLGNMSHATRHTLHVTRYMS-HATRQTLHVTRYMSQATCHTLHVTGN-----TS 54

Query: 330 HSNCHELYIHRYVQY 286
           H+ CH L++ RY+ +
Sbjct: 55  HATCHTLHVTRYMSH 69


>SB_58242| Best HMM Match : PUCC (HMM E-Value=0.14)
          Length = 784

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -3

Query: 674 YISNLVENLKTVHFRRPLPNSEYHLAPTYCASFLSNATHTGVRCNPLPKYTHSSPLSI*L 495
           + +++  +++T   + P P   Y  AP       S   HT    +P P Y +++P SI L
Sbjct: 164 HTTDIQHSVRTTSIKHPGPYYRY-TAPRSILRVYSTPVHTTSIQHPGPYYQYTAPRSI-L 221

Query: 494 NVYKI 480
            VY I
Sbjct: 222 PVYSI 226


>SB_48608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 602 LAPTYCASFLSNATHTGVRCNPLPKYTHS 516
           +AP+Y   F+++  H  +R NPLP   H+
Sbjct: 68  MAPSYANLFMASVEHQLLRNNPLPHSPHT 96


>SB_49706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 289 VCSFILHFPSNITFSHYKNLIN 224
           V S  +HFP ++TF+ YK+L++
Sbjct: 104 VFSLGIHFPISLTFAEYKDLVD 125


>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = -3

Query: 698 HRENYSIDYISNLVENLKTVHFRRPLPNSEYHLAPTYCASFLSNATHTGVRCNPLPKYTH 519
           H   YS   +  L   L  +H       + Y L  ++C     +ATHT      + +Y+H
Sbjct: 81  HIARYSHYTLCTLHTTLLILHATHTTRYAHYTLPFSFCTLLTPHATHTTHYTTHIARYSH 140

Query: 518 SSPLSI*LNVYKIH 477
            +  +I + +  +H
Sbjct: 141 YTLRTIHIKLLILH 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,213,441
Number of Sequences: 59808
Number of extensions: 519024
Number of successful extensions: 1016
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)