Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5e02
(434 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24909| Best HMM Match : Mab-21 (HMM E-Value=3.4e-06) 32 0.23
SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.95
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 29 2.2
SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 3.8
SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0) 27 5.0
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 27 5.0
SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_25880| Best HMM Match : Colipase_C (HMM E-Value=5.1) 27 5.0
SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20) 27 6.7
SB_36521| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_11475| Best HMM Match : TPR_1 (HMM E-Value=0) 27 8.8
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_24909| Best HMM Match : Mab-21 (HMM E-Value=3.4e-06)
Length = 702
Score = 31.9 bits (69), Expect = 0.23
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 9 CLTTLGRVFIMYFRKLLTSLIITGLAAEVWCHVEIEAEDYFFPLEPVINFCKIADQCQHD 188
C TL +V Y+ K + + L +VW + A+ L+ +++ C + C H
Sbjct: 546 CELTLPKVLCSYYMKTIFLWVCERLPEDVWDESNL-AQVVLGLLDELVH-CLVTKSCPHY 603
Query: 189 FVPVC 203
F+P C
Sbjct: 604 FIPEC 608
>SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 471
Score = 29.9 bits (64), Expect = 0.95
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +3
Query: 9 CLTTLGRVFIMYFRKLLTSLIITGLAAEVWCHVEIEAEDYFFPLEPVINFCKIADQCQHD 188
C TL +V Y+ K + L EVW + A+ L+ +++ C + C H
Sbjct: 382 CELTLPKVLCSYYMKTIFLWTCERLPEEVWDESCL-AQVVMGLLDELVH-CLVTKSCPHY 439
Query: 189 FVPVC 203
F+P C
Sbjct: 440 FIPEC 444
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 159 CKIADQCQHDFVPVCGQDSLGISRMFNDNCDLYEYNCDEKKQY--RHVKMDVCK 314
C D C ++ P+CG D + +++ C++ +C + K + K D C+
Sbjct: 5152 CSCPDICTFEYSPLCGSD----GKTYDNQCEMERASCLQNKDLTGKPGKCDPCE 5201
>SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +1
Query: 169 LISVNMTSFRYAGRTLSVFQECLTITAIFTSTIVTRRSNIVT*KWMFANM 318
+ S+ MTS T+++ + I T TI+T N + M NM
Sbjct: 84 MTSITMTSITMTSITMTIITMTIITMTIITMTIITMTINTININTMIFNM 133
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +3
Query: 159 CKIADQCQHDFVPVCGQDSLGISRMFNDNCDLYEYNCDEKKQYRHVKMDVCKYEAAASER 338
C C D+ PVCG D G++ + + C L C + R + VC A+ R
Sbjct: 577 CICPTNCPSDWDPVCGDD--GVT--YQNLCHLLREACTSGRIIRRLYRGVCDPVCASDGR 632
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/47 (25%), Positives = 20/47 (42%)
Frame = +3
Query: 171 DQCQHDFVPVCGQDSLGISRMFNDNCDLYEYNCDEKKQYRHVKMDVC 311
D+C + PVCG D + + + C L +C + R + C
Sbjct: 511 DRCPKEASPVCGSD----GKTYENECKLRVESCKANQNVRIISRTKC 553
>SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 325
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +3
Query: 159 CKIADQCQHDFVPVCGQDSLGISRMFNDNCDLYEYNCDEKKQYRHVKMDVCKYEAAASER 338
C + C ++ PVCG D + + + C L +C + +K C ++A S+
Sbjct: 40 CVCNEACTREYAPVCGSD----GKTYPNPCALEVESCKTNTRISVIKKGSCD-DSALSDP 94
Query: 339 MD 344
D
Sbjct: 95 CD 96
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +3
Query: 159 CKIADQCQHDFVPVCGQDSLGISRMFNDNCDLYEYNCDEKKQYRH 293
C+ C D+ PVCG D+ + + N + + +K Q H
Sbjct: 194 CECPKVCTLDYTPVCGSDNKTYANLCNLEVEACKPENTDKLQLLH 238
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +3
Query: 159 CKIADQCQHDFVPVCGQDSLGISRMFNDNCDLYEYNCDEKK 281
C C H + PVCG D + +NC C+ KK
Sbjct: 250 CVCPSDCSHTYSPVCGGD----KTTYINNCTRIAAACNMKK 286
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +3
Query: 159 CKIADQCQHDFVPVCGQDSLGISRMFNDNCDLYEYNCDEKKQYRHVKMDVC 311
C QCQ F PVCG D R + + C L C + + K +C
Sbjct: 731 CVCPRQCQVRFKPVCGTD----GREYLNRCFLRRNACRTQTSIKVHKWGLC 777
>SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 159 CKIADQCQHDFVPVCGQDSLGISRMFNDNCDLYEYNCDEKKQ 284
C+ +C PVCG D G++ + ++C+L+ C K+
Sbjct: 79 CECLSECPDHIKPVCGSD--GVT--YPNHCELHRIACVHTKK 116
>SB_25880| Best HMM Match : Colipase_C (HMM E-Value=5.1)
Length = 172
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 9 CLTTLGRVFIMYFRKLLTSLIITGLAAEVWCHVEIEAEDYFFPLEPVIN 155
C L + F YF + + GL +V HV++ D FP+ ++
Sbjct: 117 CSLKLPKYFTCYFTNVHKCGCMDGLTCKVTTHVKLPVVDLNFPIRQCVD 165
>SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)
Length = 1423
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 297 SRDDIASSRHNCTRKDRSYR*TFLKYRESPARIPERSHVD 178
S+D+ ++ H+ TRK+R Y +ES + ER +VD
Sbjct: 620 SKDNPRNADHSETRKNRQYFENLKGVKESLNKTEERDNVD 659
>SB_36521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 8 MPYYPRSCFHYVLQKIINKFDNHRI 82
MP YP SC H + + D H I
Sbjct: 1 MPSYPASCIHSAAPHVYPRCDQHAI 25
>SB_11475| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 501
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 231 MFNDNCDLYEYNCDEKKQYRHVKMDVCKYEAAASER 338
+FN DLY Y D + ++K +C YE ER
Sbjct: 310 VFNGIGDLYSYLGDNVQAIENLKNALCIYEKFGEER 345
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 159 CKIADQCQHDFVPVCGQDSLGISRMFNDNCDLYEYNC 269
CK C ++++PVCG D + + + C++ C
Sbjct: 1293 CKCPIFCTYEYMPVCGTD----GKTYGNKCEMRASAC 1325
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,726,439
Number of Sequences: 59808
Number of extensions: 187907
Number of successful extensions: 549
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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