Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5d24
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1207 + 31734940-31735500,31736565-31736683,31736791-317373... 138 4e-33
11_04_0450 - 17847676-17847841,17848024-17848131,17848223-178483... 31 0.82
01_01_1050 + 8283589-8283782,8284551-8284814,8284897-8284912,828... 30 1.4
05_02_0125 - 6852470-6852481,6852641-6853086,6853178-6853781,685... 29 2.5
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716... 29 3.3
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899 28 7.7
05_06_0018 + 24966721-24968856 28 7.7
04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019 28 7.7
>04_04_1207 +
31734940-31735500,31736565-31736683,31736791-31737318,
31738256-31738354,31739768-31739909
Length = 482
Score = 138 bits (334), Expect = 4e-33
Identities = 66/138 (47%), Positives = 91/138 (65%)
Frame = +1
Query: 169 KTPLYELHKKYGGKLVNFAGFLLPVQYVDTSVSASHLFTRQNASIFDVSHMLQTNVSGKD 348
KT LY+ H +GGK+V FAG+ +P+QY DT + S L R N S+FDVSHM ++ G+
Sbjct: 38 KTALYDFHVAHGGKMVPFAGWSMPIQYKDT-IMDSTLNCRANGSLFDVSHMCGLSLHGRQ 96
Query: 349 CLPWFESICPVDLKGLANGSSSLTVFLNDNGGIIDDLIVTKVNEQQLYIVSNAGRLEVDK 528
+P+ ES+ D+ L +G+ +LTVF ND GG IDD +VTKV +Q +Y+V NAG + D
Sbjct: 97 AIPFLESLVVADVAALKDGTGTLTVFTNDRGGAIDDSVVTKVTDQHIYLVVNAGCRDKDL 156
Query: 529 QHMLETSELFKKRGNDVK 582
H+ E E F K+G DVK
Sbjct: 157 AHIGEHMEAFNKKGGDVK 174
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/25 (68%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +2
Query: 593 WDVND-RALLALQGPKAAKLLQTLT 664
W V+D R+LLALQGP AA LQ LT
Sbjct: 175 WHVHDERSLLALQGPLAAPTLQLLT 199
>11_04_0450 -
17847676-17847841,17848024-17848131,17848223-17848377,
17848471-17848560,17848650-17848748,17848862-17848928,
17849028-17849124,17849357-17849492,17849579-17849634,
17849718-17849801,17849909-17850125
Length = 424
Score = 31.1 bits (67), Expect = 0.82
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = -3
Query: 554 NSEVSSMCCLSTSKRPALDTI*SCCSFTFVTIKSSIIPPLSFRKTVSELDPFASPLR--S 381
+S +S++CCLS + D+ +C SF + + PP + + + P ++ R
Sbjct: 300 SSHISAVCCLSAADDLVADSKRACLSFCLANPITRVPPPWGIMRNMHKKIPDSACKRFQM 359
Query: 380 TGQI---DSNHGKQSLP 339
G + D+N QSLP
Sbjct: 360 YGYLFEQDNNSALQSLP 376
>01_01_1050 +
8283589-8283782,8284551-8284814,8284897-8284912,
8285032-8285389,8285860-8286050,8286108-8286197,
8287399-8287596
Length = 436
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 518 SKRPALDTI*SCCSFTFVTIKSSIIPPLSFR-KTVSELDP 402
S+RP L+T C V+++ I+ P SFR ++ +DP
Sbjct: 349 SRRPDLETFCDVCPDVIVSLQQQIVGPFSFRVESTVTIDP 388
>05_02_0125 -
6852470-6852481,6852641-6853086,6853178-6853781,
6853970-6854187,6854283-6854437,6854561-6854772
Length = 548
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 302 YLTYLTCYKQMSAVKIA-CRGSSQFAPWILKGLRT 403
+L YL ++ + +K+A C+ + A W L G+RT
Sbjct: 92 WLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRT 126
>01_05_0420 +
21969797-21970939,21971307-21971369,21971488-21971616,
21972241-21972291,21972669-21972809,21972922-21973122,
21973201-21973419,21973582-21973700,21973772-21973862,
21975864-21975965,21976291-21976315,21976522-21976592
Length = 784
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +1
Query: 349 CLPWFESICPVDLKGLANGSSSLTVFLNDNGGIIDDLIVTKVNEQQLYIVSNAGRLEVDK 528
CL +S +++ G N L +N+ G+IDD ++ Q + + +L+ D
Sbjct: 190 CLDGEDSELVIEMVGNDNEQLQLDAMMNNLSGLIDDASACVMSAQSCGV--SGDKLQSDD 247
Query: 529 QHMLETSELFKKRGND 576
+ E EL GND
Sbjct: 248 RVAEEVKELGAGIGND 263
>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
Length = 712
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 187 LHKKYGGKLVNFAGFLLPVQYVDTSVSASHLFT 285
L + YGGK+ +FA L+ + +D + L T
Sbjct: 151 LMRNYGGKIYDFASNLIAIDVIDGKIELQQLGT 183
>05_06_0018 + 24966721-24968856
Length = 711
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 433 DNGGIIDDLIVTKVNEQQLYIVSNAGRLEVDKQHMLETSELFKKRGNDVKCQLLGCERQS 612
DNGG ++ ++ TK++ Y+V+ + D + E ++F + L GC +S
Sbjct: 545 DNGGDVNRVVATKLSNYCAYLVAFVPEMLPDPSYNAE--QMFDTAVQQARDHLGGCRTES 602
>04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019
Length = 486
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 635 SAPVVLEVLCRSHPRS*HFTSLPLFLNNSEVSSMC 531
S+PVV V C S PRS SL L L++ V+ +C
Sbjct: 4 SSPVVATVTCASSPRS-SLASLRLPLHDHAVTLVC 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,318,781
Number of Sequences: 37544
Number of extensions: 320097
Number of successful extensions: 749
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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