Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5d09
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    27   0.65 
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   2.0  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    24   6.1  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    24   6.1  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    23   8.1  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    23   8.1  

>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 0.65
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 126 GNFFKDLEKMGQRVRDAVI 182
           GNF KDL ++G+ + D++I
Sbjct: 253 GNFVKDLSQLGRNLEDSII 271


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -1

Query: 205  VSTAGAALMTASRTL*PIFSRSLKKLPGAAETEAVAKTIANTKTKIFEIFILYFREIETQ 26
            V T+     TAS+ + P F  S+    G  ETE + + +   K K     +  +RE    
Sbjct: 1580 VPTSPLKAPTASQLIIPNFDGSITNYSGEEETEWLQEEVNIMKIKELTSTVNKYREQLAM 1639

Query: 25   RTSCNE 8
              S NE
Sbjct: 1640 VQSLNE 1645


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 62  LENFRFRVRYCFRHGFGLGSSRQLLQ 139
           +E  +F  +YC   GFG+ S  + L+
Sbjct: 47  VEVAQFLAKYCSAEGFGVASIEEALE 72


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 206 GVDCWSRADDGVSNPLTHFFKILEEVA-GSCRDRSRGENNSEHEN 75
           GVD  SRA+   +N   HF   LE +A    ++RS+     E EN
Sbjct: 49  GVDAGSRAETAKNNGAAHF---LEHLAFKGTKNRSQKALELEFEN 90


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 7/15 (46%), Positives = 14/15 (93%)
 Frame = -3

Query: 113 DRSRGENNSEHENEN 69
           ++S+GE+N++ E+EN
Sbjct: 357 EKSKGESNTDEESEN 371


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 247 IIPQNVTTLIILNKDKDYFKKK 312
           IIP+ V  ++ +N D D++K K
Sbjct: 153 IIPRMVDAMLRVNSDLDFWKDK 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,040,617
Number of Sequences: 5004
Number of extensions: 16204
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)