Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5d09
         (313 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1067 - 33858215-33858321,33858422-33858527,33859014-338592...    29   0.77 
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583...    28   1.8  
06_01_1013 - 7931756-7935109                                           27   2.3  
06_01_0599 - 4327671-4330034                                           27   2.3  
10_08_0545 - 18673640-18674249,18674579-18674934                       27   4.1  
11_01_0370 + 2814888-2814979,2815450-2815620,2815753-2815834,281...    26   5.4  

>02_05_1067 -
           33858215-33858321,33858422-33858527,33859014-33859218,
           33859463-33859650,33859780-33859957,33860201-33860298,
           33860619-33860873,33861002-33861236,33861846-33861973
          Length = 499

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -1

Query: 166 TL*PIFSRSLKKLPGAAETEAVAKTIANTK 77
           TL P+FS +LKKL  + E+EA  K+ +  K
Sbjct: 457 TLRPVFSSALKKLEESLESEATKKSKSGDK 486


>03_05_0712 -
           27057858-27057941,27058093-27058182,27058268-27058384,
           27059759-27059866,27060314-27060406,27060499-27060669,
           27061505-27061757,27061860-27062138,27062939-27063273,
           27063364-27064332,27064711-27065182,27065243-27065291,
           27066564-27066804,27067606-27067695,27068172-27068294,
           27068365-27068418
          Length = 1175

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 233 LSESFCFCQGVDCWSRAD--DGVSNPLTHFFKILEEVAGSCRD 111
           LS S CF QG+DC    D  + VS  L  FF+  +E+  S  D
Sbjct: 389 LSNSGCFVQGLDCCLYVDAINCVSQSLLKFFEENKEMLLSFGD 431


>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 121  LPATSSRILKKWVRGFETPSSARLQQSTPWQKQKLSDKD 237
            LP++S++    WV G +   +A    + PW+K   S+ D
Sbjct: 990  LPSSSAQPGNVWVAGQKDGVAATKSSANPWKKATASEPD 1028


>06_01_0599 - 4327671-4330034
          Length = 787

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 241 LYPCPRAFAFAKVSTAGAAL 182
           L+PCP +F+FA  +T+ AAL
Sbjct: 101 LFPCPDSFSFAFAATSLAAL 120


>10_08_0545 - 18673640-18674249,18674579-18674934
          Length = 321

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 221 FCFCQGVDCWSRADDGVSNPLTHFFKILEEVAGSCRD 111
           F  CQ +  W   +      + H   I+EE+A SC++
Sbjct: 137 FGICQAIQRWEELESLTMPTIGHPPYIMEEIARSCKN 173


>11_01_0370 +
           2814888-2814979,2815450-2815620,2815753-2815834,
           2816275-2816316,2816397-2816456,2816817-2816913,
           2817382-2819024,2819155-2819256,2819369-2819509,
           2819625-2819750,2819935-2820096
          Length = 905

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 160 RGFETPSSARLQQSTPWQKQKLSDKDR 240
           +G +TPS A  ++S P +  K   KDR
Sbjct: 684 KGLDTPSKANRKRSRPGESPKPRPKDR 710


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,139,054
Number of Sequences: 37544
Number of extensions: 92359
Number of successful extensions: 324
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)