Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5d09
         (313 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          27   3.1  
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   3.1  
SB_32138| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_52094| Best HMM Match : PI-PLC-X (HMM E-Value=0.14)                 25   9.5  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_27411| Best HMM Match : RVT_1 (HMM E-Value=0.002)                   25   9.5  
SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)                   25   9.5  
SB_8973| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  

>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -3

Query: 212 CQGVDCWSRADDGVSNPLTHFFKILEEVAGSCRDRSRGENNSEHENENFRDFHFVFSRNR 33
           C G DC S +     NP++  F+  EE+    R  S+    S+++       H V    R
Sbjct: 782 CSGDDCPSTSQREDDNPVSKMFQ--EEIRARARKYSQNTGFSQNQQSFSTPEHGVVEPRR 839

Query: 32  NS 27
           +S
Sbjct: 840 SS 841


>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1176

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 137 EEVAGSCRDRSRGENNSEHENENFRDFHFVFSRNRNSTYELQRT 6
           +EV  + ++R RGE    H N   R    +F R  N  Y+LQ T
Sbjct: 116 KEVENNWKNRYRGEIAFAHGNSKSRGVAILFGRKLN--YQLQDT 157


>SB_32138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 281 NIINVVTFCGII*ALSLSESFCFCQGVDC 195
           N+IN V  C +   +S++++     GVDC
Sbjct: 8   NVINTVKLCSLDYRMSINQNNTGSDGVDC 36


>SB_52094| Best HMM Match : PI-PLC-X (HMM E-Value=0.14)
          Length = 526

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 247 IIPQNVTTLIILNKDKDY 300
           +IP N+T LI   K+KDY
Sbjct: 364 LIPSNITKLISSPKEKDY 381


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 136  SRILKKWVRGFETPSSARLQQSTPWQKQKLSDKDRA*IIPQNVTTLI 276
            ++IL+ ++R  +TPS + L+     +   +S +DR   +P N   L+
Sbjct: 1426 TQILRSYIRDTQTPSYSTLEAQPQLRDDVISYEDR---LPSNTHPLV 1469


>SB_27411| Best HMM Match : RVT_1 (HMM E-Value=0.002)
          Length = 698

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 149 FKILEEVAGSCRDRSRGENN-SEHENENFRD 60
           FK++  V    +DR+ G+NN S++ +  F+D
Sbjct: 144 FKLITMVNTVIKDRTMGDNNYSDNNDHTFKD 174


>SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)
          Length = 292

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 110 RSRGENNSEHENENFRDFHFVFSRNRNSTY 21
           R   +NN+ + N N  + HF  S + N+ Y
Sbjct: 192 RKSNDNNNHYRNSNDNNNHFRKSNDNNNHY 221


>SB_8973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 136 KKLPGAAETEAVAKTIANTK--TKIFEIFIL 50
           +K+PG       ++TIAN K  T +F I IL
Sbjct: 233 RKIPGITHERTRSRTIANNKKITMMFAIIIL 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,309,393
Number of Sequences: 59808
Number of extensions: 113373
Number of successful extensions: 358
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)