Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5d07
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    28   1.2  
SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.2  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   8.2  

>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 555 AIAEPLPLVRASSRCYAPCDTVTWL-TRKVRQLNDQLHATHAALKKVVG 698
           A+AEPL LVR S       D + ++  R  R+LN +LHA    L  V+G
Sbjct: 6   AVAEPLDLVRLS------LDEIVYVKLRGDRELNGRLHAYDEHLNMVLG 48


>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 294 CSLNLCEQACEVQGESMWCS 353
           C+  +C+QA E QG S W S
Sbjct: 88  CNSWMCQQAAEEQGNSNWDS 107


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 575 WKRFCNSQRYPWDT 534
           WKR+C  + Y W+T
Sbjct: 336 WKRWCRVKEYSWNT 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,623
Number of Sequences: 5004
Number of extensions: 64839
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)