Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5d03
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 71 1e-13
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 40 4e-04
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 27 1.9
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po... 27 2.5
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 27 2.5
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 27 3.3
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 4.4
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 5.8
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.8
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 25 7.6
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 71.3 bits (167), Expect = 1e-13
Identities = 63/204 (30%), Positives = 94/204 (46%), Gaps = 5/204 (2%)
Frame = +2
Query: 71 VEEMAELLFVPFKKSSD-VDIVKPLKNLIQSTYNSAENTEDYTDALNELSRLRTNAVWKV 247
+E++A F KK + D V+P + Y ++ + ED A N L R NA
Sbjct: 1 MEKLATPFFYLNKKETKHSDWVEPFTTFVSRIYGNSVDVEDQIKAFNTL---RENAADVD 57
Query: 248 FEKTSLDTIYSYYDQLVALESKIPP--QEVQIPFKWKDAFDKGSIFGGRMSLTISSLEYE 421
D +YSYY QL L + P + I F+W D D + F + SSL +E
Sbjct: 58 DTVAGKDILYSYYGQLDYLSFRFPTGGNGINISFEWSDILDPDADF-----VKQSSLAFE 112
Query: 422 RMCILFNIAAMQSMIAAQE-PLDTEDSLKLAAKYFQQSAGIFVYLKANIMMAVHQETTPD 598
+ +LFN+ ++ S +AA T D K AA Q ++GI L+ + + A + D
Sbjct: 113 KASVLFNLVSLLSRMAANHASAYTVDDYKAAANCLQCASGIAKLLRESFIHAPGR----D 168
Query: 599 LNPETLDALAKLMLAQAQE-VIAH 667
L+ L + L L QAQE V+ H
Sbjct: 169 LDSNFLLGIYNLFLGQAQECVLGH 192
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 39.5 bits (88), Expect = 4e-04
Identities = 43/160 (26%), Positives = 63/160 (39%)
Frame = +2
Query: 191 YTDALNELSRLRTNAVWKVFEKTSLDTIYSYYDQLVALESKIPPQEVQIPFKWKDAFDKG 370
Y + L LR+ SL + +Y+ L LE K E PF W
Sbjct: 34 YENDLKTFKALRSQLCLSHPSINSLSSFQTYHQLLCVLEQK-HLSECVAPFVWT----LS 88
Query: 371 SIFGGRMSLTISSLEYERMCILFNIAAMQSMIAAQEPLDTEDSLKLAAKYFQQSAGIFVY 550
S R S +L +E C+++ +A A + +L A +YFQ SAG F Y
Sbjct: 89 SSSNERESF--ENLIFEHACLIYRLACTYHTTAISLCNEKPPNLVQACQYFQLSAGCFRY 146
Query: 551 LKANIMMAVHQETTPDLNPETLDALAKLMLAQAQEVIAHK 670
+ ++ ++ D N L A LA+AQ I K
Sbjct: 147 IND---FYIYTKSL-DFNENLLKAWEIYCLAEAQTCIFSK 182
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/59 (23%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Frame = +2
Query: 68 SVEEMAELLFVPFKKSSDVDIVKPL-----KNLIQSTYNSAENTEDYTDALNELSRLRT 229
+++ + +L+ + +K + + + L K+ I+ SAEN +D++ ++N+LS +R+
Sbjct: 21 TLDRLPQLISLACEKGQETQVYERLNELASKSAIRVEQLSAENNQDFSKSVNQLSVVRS 79
>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 27.1 bits (57), Expect = 2.5
Identities = 33/169 (19%), Positives = 70/169 (41%), Gaps = 3/169 (1%)
Frame = +2
Query: 170 SAENTEDYTDALNELSRLRTNAVWKVFEKTSLDTIYSYYDQLVALESKIPPQEVQIPFKW 349
S E ED+ + ++ L + ++F ++ L+ + Q ++ + Q+V I +
Sbjct: 165 SVETIEDFNKYCHYVAGLVGIGLSRLFAQSKLEDPDLAHSQAISNSLGLFLQKVNIIRDY 224
Query: 350 KDAFDKGSIFGGRMSLTISSLEYERMCILFNIA-AMQSM--IAAQEPLDTEDSLKLAAKY 520
++ FD F R + + + +C+ N A++ + + A D+L ++
Sbjct: 225 REDFDDNRHFWPREIWSKYTSSFGDLCLPDNSEKALECLSDMTANALTHATDALVYLSQL 284
Query: 521 FQQSAGIFVYLKANIMMAVHQETTPDLNPETLDALAKLMLAQAQEVIAH 667
Q IF + +MA+ NP+ K+ QA ++I H
Sbjct: 285 KTQE--IFNFCAIPQVMAIATLAAVFRNPDVFQTNVKIRKGQAVQIILH 331
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/58 (20%), Positives = 27/58 (46%)
Frame = +2
Query: 119 DVDIVKPLKNLIQSTYNSAENTEDYTDALNELSRLRTNAVWKVFEKTSLDTIYSYYDQ 292
+VD+ K + + ++ + Y D L E+ L N ++K+ + + + + Y Q
Sbjct: 81 EVDVRKRISRIFNKGQQEFDSLQAYNDYLEEVEILTFNLIYKIDVEETEEKVKQYEKQ 138
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 191 YTDALNELSRLRTNAVWKVFEKTSLDTIYSYYDQLVALESKIPPQEVQIPFK 346
+ + +LSRL VWK+ + +L + ++ V L+ K P V I F+
Sbjct: 655 FLEEQGQLSRLDEFRVWKILVEVALGLQFIHHKNYVHLDLK--PANVMITFE 704
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 152 IQSTYNSAENTEDYTDALNELSRLRTNAV 238
+QS+ SAEN +TDA NEL+ L AV
Sbjct: 24 LQSSLESAENDPFWTDA-NELNELEGPAV 51
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 296 VALESKIPPQEVQIPFK 346
V L K+PP++V IPFK
Sbjct: 523 VCLIDKLPPKKVDIPFK 539
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 395 LTISSLEYERMCILFNIAAMQSMIAAQEPLDTEDSLKLAAKYFQQSAGIFVYLK 556
L + S E + C FNI + L ++ LK A K+ + +F +LK
Sbjct: 257 LLLQSSE-NQACKFFNIGPQVYFDPRERLLHVKELLKFALKHIDSNDSLFTFLK 309
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 7.6
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Frame = +2
Query: 104 FKKSSDVDIVKPLKNLIQSTYNSAENTEDYTDALNELSR---------LRTNAVWKVFEK 256
F K+ VDI++ LK +T AE + L S +++ A W + E
Sbjct: 290 FCKNDTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRLIKSAAKWSISEA 349
Query: 257 TSLDTIYSYY 286
D I SYY
Sbjct: 350 FYYDHIVSYY 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,629
Number of Sequences: 5004
Number of extensions: 56870
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -