Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5d03
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 74 1e-13
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 60 2e-09
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875... 31 0.85
01_07_0126 - 41222916-41222942,41223120-41223190,41223478-412235... 30 2.0
07_03_0723 + 20954827-20954905,20954974-20956277 29 3.4
07_01_1182 + 11207282-11207330,11208015-11208094,11208181-112086... 29 3.4
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 28 6.0
01_06_1225 - 35512211-35512240,35512762-35512850,35514162-355143... 28 6.0
11_06_0291 + 22008412-22012284 28 7.9
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833... 28 7.9
03_05_0109 - 20903013-20903062,20903406-20903538,20903631-209037... 28 7.9
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 73.7 bits (173), Expect = 1e-13
Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 13/209 (6%)
Frame = +2
Query: 89 LLFVPFKKSSDVDIVKPLKNLIQSTYNSAENTEDYTDALNELSRLRTNAVWKVF-EKTSL 265
+L + K+++ D+ +PL+ I S Y+ E D L + LR + + +SL
Sbjct: 8 MLAIHEKRTTPTDLYRPLRLYIASAYSEREAAAA-DDDLAAVRDLRADVEQPSLPDPSSL 66
Query: 266 ----DTIYSYYDQLVALESKIPPQEVQ-----IPFKWKDAFDKGSIFGGRMSLTISSLEY 418
D + +Y L +E + P + + F W DAF G +++S+
Sbjct: 67 ERRRDALLAYARALSLVEPRFPISSDRAHVHSLAFTWHDAFKTGK------KASVASIHL 120
Query: 419 ERMCILFNIAAMQSMIAAQEPLDTEDSLKLAAKYFQQSAGIFVYLKANIMMA---VHQET 589
E+ +LFN+AA+ S IA T+ ++ A FQ +AG F +++ + + A T
Sbjct: 121 EKAAVLFNLAAVYSQIALAADRATDVGIRTACGSFQSAAGAFAWMRESGVAAKAVAAGAT 180
Query: 590 TPDLNPETLDALAKLMLAQAQEVIAHKCI 676
T D+ PE L KLMLAQAQE K I
Sbjct: 181 TVDVTPECAAMLEKLMLAQAQECFFEKVI 209
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 59.7 bits (138), Expect = 2e-09
Identities = 57/192 (29%), Positives = 89/192 (46%), Gaps = 3/192 (1%)
Frame = +2
Query: 89 LLFVPFKKSSDVDIVKPLKNLIQSTYNSAENTEDYTDALNELSRLRTNAVWKVFEKTSLD 268
+L VP KK++ ++ + + +NSA T D +A LS + A + + S
Sbjct: 465 MLSVPEKKTAATELFRD-----RHFFNSAFFT-DLREARASLSAPSSQATTQ--DAASRR 516
Query: 269 TIYSYYDQLVALESKIPPQ-EVQIPFKWKDAFDKGSIFGGRMSLTISSLEYERMCILFNI 445
+ Y +L+A P + + F W DAF + T +SL +E+ ++FN+
Sbjct: 517 ALLLRYHRLLASARDDPCDFDDDLAFTWHDAFRP------HLRRTAASLRFEKAAVVFNV 570
Query: 446 AAMQSMIAAQEPLDTEDSLKLAAKYFQQSAGIFVYLKANIMMAVHQET--TPDLNPETLD 619
A S IAA +K A FQ++AG F +M ++T T D+ PE
Sbjct: 571 GAASSRIAAAVDRAAVGGVKAACGEFQRAAGAF-RAAGEMMEGEEEDTEDTVDMGPEASA 629
Query: 620 ALAKLMLAQAQE 655
L +LMLAQAQE
Sbjct: 630 MLERLMLAQAQE 641
>02_05_0602 +
30283893-30284170,30286259-30286305,30286534-30287510,
30287611-30287920,30288561-30290197
Length = 1082
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 367 LVKCILPFEWNLNFLRRNLALKGHQLIIVTVNSVKR 260
++KC +P E NL+ +R LAL H + V SV R
Sbjct: 670 MLKCFMPDELNLSIIRVLLALTAHAKALAAVVSVVR 705
>01_07_0126 -
41222916-41222942,41223120-41223190,41223478-41223560,
41223587-41223653,41223740-41223848,41224431-41224511,
41224671-41224940,41225035-41226510,41226832-41226908,
41227812-41227912,41229397-41229660,41230964-41231136
Length = 932
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 427 VHLIQHSSYAEHDCSSGTSRH*GFTQASCQIFSAISWHLCIPEGEHHDGS 576
+ + QHSS+A+H+ S+G+S + + F+ IPE + HD S
Sbjct: 572 LRMSQHSSFADHEASAGSS----YFNPLAETFTVGLEKQSIPEKKGHDSS 617
>07_03_0723 + 20954827-20954905,20954974-20956277
Length = 460
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 494 PQCREVPELQSCSA*LLC*IRCTFF 420
PQC+EV L SC+ LLC RC F
Sbjct: 188 PQCKEVIPLDSCNGLLLC--RCLQF 210
>07_01_1182 +
11207282-11207330,11208015-11208094,11208181-11208645,
11213485-11213568,11213925-11214113,11214191-11214277,
11214343-11214969
Length = 526
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +2
Query: 368 GSIFGGRMSLTISSLEYERMCILFNIAAMQSMIAAQEPLDTEDSLKLAAKYFQQS--AGI 541
G GGR+ IS + +R+ I + A +++ EP DS AA Y S AG+
Sbjct: 97 GVRIGGRVCKGISGGQRKRVSICVELLASPALLFLDEPTSGLDS---AASYHVMSRIAGL 153
Query: 542 FVYLKANIMMAVHQETT 592
++ AVHQ +T
Sbjct: 154 ARRDGMTVVAAVHQPST 170
>07_03_1591 +
27967065-27967090,27967236-27968054,27984940-27985022,
27985590-27985744,27985956-27986461,27986551-27986703,
27987146-27987485,27987558-27987822,27987897-27988634,
27989734-27989779,27989849-27990223,27991511-27991567,
27991640-27992438
Length = 1453
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 209 ELSRLRTNAVWKVFEKTSLDTIY 277
+LSR+ T AV+KVFE + D++Y
Sbjct: 708 QLSRVYTRAVFKVFEDSLHDSVY 730
>01_06_1225 -
35512211-35512240,35512762-35512850,35514162-35514312,
35514946-35515011,35515517-35515583,35516517-35516590
Length = 158
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 503 KLAAKYFQQSAGIFVYLKANIMMAVHQETTPDLNPETLDALAKL 634
KLA+ F++ +Y+K N + V T P P TL + L
Sbjct: 59 KLASHLFRRKFAKKIYVKLNFLSVVSDTTCPTQYPNTLHSAKSL 102
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 2 ECEVNWICQEQFLNVIPVNSYSSVEEMAELLFVPFKKSSDVDIVKPLKNLIQSTYN 169
ECE + C F + + N S EE+++L D + KN++ +YN
Sbjct: 759 ECEGHEFCMRIFTHAVYANPKKSTEELSKLHSTLQDSQKSFDAI--AKNMLMYSYN 812
>06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,
8332461-8332619,8333246-8333372,8333444-8333775,
8333859-8334593,8334735-8335073,8335160-8335313,
8335405-8336154,8336242-8336372
Length = 1565
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/68 (22%), Positives = 37/68 (54%)
Frame = +2
Query: 131 VKPLKNLIQSTYNSAENTEDYTDALNELSRLRTNAVWKVFEKTSLDTIYSYYDQLVALES 310
V+ K I T+ + EN+ ++T + + L+ + N++ + +DTI +++ ++
Sbjct: 979 VEKSKVEIPGTHENWENSLEHTQS-SSLT-VAANSIKPLIRGDQIDTIVTHFGLKTDIKG 1036
Query: 311 KIPPQEVQ 334
++PPQ +
Sbjct: 1037 EVPPQSAE 1044
>03_05_0109 -
20903013-20903062,20903406-20903538,20903631-20903726,
20904011-20904168,20904278-20904392,20904486-20904539,
20904818-20904925,20905406-20905495,20905907-20906086,
20906204-20906516,20906619-20906794
Length = 490
Score = 27.9 bits (59), Expect = 7.9
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 134 KPLKNLIQSTYNSAENTEDYTDALNELSRLRTNAVWKVFEKTSLDTIYSY-YDQLVALES 310
K L ++QS E+ A EL A+ V EKT+ IYS Y++L S
Sbjct: 240 KLLSKIVQSPEKLQRALEEKKTARAELKNAEKIAMQSVQEKTATLEIYSKGYEKLSKHSS 299
Query: 311 KIPPQEVQIPFKWKDAFDK 367
KI Q +Q F A +K
Sbjct: 300 KI--QALQEQFTATKALEK 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,798,906
Number of Sequences: 37544
Number of extensions: 355850
Number of successful extensions: 865
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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