Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5c21
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0441 - 3363069-3363137,3363273-3363430,3363549-3363613,336... 32 0.55
03_01_0612 - 4501595-4501619,4501752-4501906,4502051-4502092,450... 30 2.2
02_02_0162 + 7315562-7315846,7316432-7316662,7317002-7317144,731... 29 3.9
02_01_0405 - 2952434-2955583 29 5.1
02_03_0137 + 15624078-15624101,15624259-15624312,15624900-156249... 28 6.8
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 28 9.0
05_01_0498 + 4152729-4152820,4153316-4153425,4153840-4153877,415... 28 9.0
>11_01_0441 -
3363069-3363137,3363273-3363430,3363549-3363613,
3363709-3363777,3363881-3363973,3364081-3364184,
3364327-3364410,3364486-3364693,3364809-3364880,
3365005-3365080,3365788-3365900,3366006-3366153,
3366996-3367073,3367968-3368097,3368296-3368486,
3368644-3368704,3368847-3368956,3369090-3369312
Length = 683
Score = 31.9 bits (69), Expect = 0.55
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Frame = +1
Query: 151 PPAFGIEGYARIGNPLTNPSVVEIKPKTTAGQ-NKYCLKYL-----YSELFATAIEDAII 312
P A G +G + P VV +KP TAG+ +K L L + A +EDA+I
Sbjct: 343 PVALGADGGGSVRMPAALCGVVGLKP--TAGRFSKDGLLPLNWTVGMPGILAATVEDALI 400
Query: 313 AYRILAESNSEMRIQKTLSDMPILLAKKYSVEQPAFADEL 432
AY +A+ + +Q + LL + + FA++L
Sbjct: 401 AYAAIADQSQPSHLQANARTLYFLL-HVWMFSETEFAEDL 439
>03_01_0612 -
4501595-4501619,4501752-4501906,4502051-4502092,
4502238-4502279,4502365-4502464,4502825-4502889,
4503140-4503217
Length = 168
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = +1
Query: 472 KLNKLNNDRLLFSDILIATYLGLSLLENWKVLTDRNNGLISIERNRLNLIEEEAKNRNNL 651
+L++LN ++L + + + LG L K + D +GL ER R+ LIEE + + +
Sbjct: 54 ELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGL---ERKRMQLIEENLRLKEQV 110
Query: 652 RELMKQYRQQRNHIKSVTYD 711
+ + Q + Y+
Sbjct: 111 SRMSRMEEMQPGPDSEIVYE 130
>02_02_0162 +
7315562-7315846,7316432-7316662,7317002-7317144,
7317267-7317381,7317940-7318020
Length = 284
Score = 29.1 bits (62), Expect = 3.9
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Frame = +1
Query: 289 TAIEDAIIAYRILA--ESNSEMRIQKTLSDMPILLAKKY-SVEQPAFADELDSIDANN-L 456
T I DA I +L S +E+ K LS + L + Y S + A +EL+ A L
Sbjct: 105 TTIPDASIFKGLLVFDVSFNEISSLKGLSKVSSTLKELYVSKNEVAKMEELEHFHALQIL 164
Query: 457 KCTSYKLNK-LNNDRLLFSDILIATYLGLSLLENWKVLTDRNNGLISIER-NRLNLIEEE 630
+ S +L + + + L S I GLS L+N +VL +N L +IE L+ +E+
Sbjct: 165 ELGSNRLRECIALEELYLSHNGIQKMEGLSTLQNLRVLDVSSNKLTAIEDVETLSRLEDL 224
Query: 631 AKNRNNLREL 660
N N + L
Sbjct: 225 WLNDNQIPSL 234
>02_01_0405 - 2952434-2955583
Length = 1049
Score = 28.7 bits (61), Expect = 5.1
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 436 SIDANNLKCTSYKLNKLNNDRLLFSDILIATYLGLSLLENWKVL-TDRNN 582
SI +N CTS K+ LNN+ FS LI Y+ S L N K L RNN
Sbjct: 316 SIPSNLSNCTSLKIIDLNNNN--FSGELI--YVNFSNLPNLKTLDLMRNN 361
>02_03_0137 +
15624078-15624101,15624259-15624312,15624900-15624954,
15625192-15625296,15625682-15625722,15626057-15626162,
15627010-15627016,15627134-15627218,15627315-15627428
Length = 196
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 538 LSLLENWKVLTDRNNGLISIERNRLNLIEEEAKNRNNLRELMKQYRQQRNHIKSVT 705
L L E + L D + + S++ ++ L ++ A+ NN+REL++Q I S+T
Sbjct: 139 LLLNEQEQKLNDSESAIASMQTSKEYLEKQLAEVENNIRELLQQDPGLARQILSMT 194
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 334 SNSEMRIQKTLSDMPILLAKKYSVEQPAFADELDSIDANNL 456
S E+ + +M + L K+YS + FAD + +D ++L
Sbjct: 483 SREEVEVHDVGKEMELDLIKQYSQVERIFADRVSKVDGDDL 523
>05_01_0498 +
4152729-4152820,4153316-4153425,4153840-4153877,
4154335-4154433,4154461-4157475
Length = 1117
Score = 27.9 bits (59), Expect = 9.0
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Frame = +1
Query: 424 DELDSIDANNLKCTSYKLNKLNNDRLLFSDILIATYLGLSLLENWKVLTDRNNGLISIER 603
++LD + +++ S L LN FS ++ LS L +L +R G I E
Sbjct: 357 NKLDGVIPSSIGGLS-SLQSLNLANNQFSGVIPPEIGNLSGLTYLNLLGNRLTGGIPEEL 415
Query: 604 NRLNLIEEEAKNRNNLR-ELMKQYRQQRNHIKSVTYDTNVVIG 729
NRL+ ++ ++NNL E+ Q ++K + N++ G
Sbjct: 416 NRLSQLQVVDLSKNNLSGEISAISASQLKNLKYLVLSENLLEG 458
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,639,845
Number of Sequences: 37544
Number of extensions: 280998
Number of successful extensions: 622
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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