Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5c21
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    33   0.16 
Z92777-4|CAB07170.1|  304|Caenorhabditis elegans Hypothetical pr...    30   2.0  

>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +1

Query: 577 NNGLISIERNRLNLIEEEAKNRNNLRELMKQYRQQRNHIKS 699
           +  L+S E  ++  IE +AKNR  +R+L++ Y Q+ N  K+
Sbjct: 15  SQALLSSETTKIT-IEADAKNRETIRKLLEAYEQEHNVFKA 54


>Z92777-4|CAB07170.1|  304|Caenorhabditis elegans Hypothetical
           protein C17H1.6 protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 601 RNRLNLIEEEAKNRNNL-RELMKQYRQQRNHIKSVTY 708
           RN+ N  EEE   R  + +E++KQ  + +NHI+   +
Sbjct: 21  RNQKNAYEEELMTREKIDQEMLKQAYENKNHIEETIF 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,273,407
Number of Sequences: 27780
Number of extensions: 277347
Number of successful extensions: 607
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)