Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5c16
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    25   0.54 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.2  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   8.7  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   8.7  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 150 FYILIYCSHVLKIYRSCNYVNFC 82
           F  L+ C   LKIY    Y  FC
Sbjct: 16  FLFLLICDSYLKIYHKEKYRKFC 38


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 263 WYIQVPWGRMCVVAWG-DCCNPPVLL 337
           W+  +P  R+CV AW    C+P + L
Sbjct: 475 WHTWMPVMRICVSAWNPKDCDPLITL 500


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 373 PSNQIDAREILFYRHR 420
           PS+ +   E  FYRHR
Sbjct: 552 PSDYVKQTERRFYRHR 567


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 272 QVPWGRMCVVAW 307
           Q PWG+   V W
Sbjct: 195 QEPWGKRAYVTW 206



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 308 PKPPRTSGPKEPVCTILFLINS 243
           P+ P   GP   + T+L+ +NS
Sbjct: 291 PQSPFIDGPVFVILTLLYSLNS 312


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,210
Number of Sequences: 336
Number of extensions: 3134
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)