Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5c16
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    41   1e-04
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    34   0.015
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    34   0.020
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   4.1  
SPAC167.04 |pam17||presequence translocase-associated motor subu...    25   7.1  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       25   7.1  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    25   9.4  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    25   9.4  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
 Frame = +2

Query: 320 NPPVLLCHGLADSATSFRPLIKLMPEKFY--FIGIDLPGCGKSDRFPPGLMINIYDLVYA 493
           +PPVL+ HGL  S  ++R L K    K       ID    G S    P   ++   +   
Sbjct: 20  HPPVLIFHGLLGSKRNWRSLAKKFSCKLDRDIYAIDQRCHGDSPCVAP---LSYSAMALD 76

Query: 494 VNAVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPGKLTKLIEIDPINFY 637
                K  + D  +++GHS+GA    +  L +P K+ KL+ +D   +Y
Sbjct: 77  AFQFMKDHKLDKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNSPWY 124


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 536 LVGHSLGAIIGKLYNLVYPGKLTKLIEIDPI 628
           LVGHS+G  +  +Y + YP ++ KL+ + P+
Sbjct: 176 LVGHSMGGYLSAVYAMQYPERVEKLLLVSPV 206


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
 Frame = +2

Query: 341 HGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSDRFPPGLMINIYDLV-------YAVN 499
           HGL    + F+ ++   P        D  GCG S +  P   I   D +           
Sbjct: 106 HGLGGQMSQFQKVMSYFPPTACLFSFDYWGCGLSRQAFPNQRIGSVDQLTTKGLSKLTYK 165

Query: 500 AVAKHFRWDA-FNLVGHSLGAIIGKLYNLVYPGKLTKLIEIDP 625
            + K F  +  F L+GHS+GA I    + +   + T L+ ++P
Sbjct: 166 VLEKLFPENTQFILIGHSMGATIASRVSKMLQTRCTALLLLNP 208


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
 Frame = +2

Query: 533 NLVGHSLGAIIGKLYNLV-YPG--KLTKL-IEIDPINFYAV 643
           +L+GHSLGA+I  L++++ Y G  K +KL ++    NF+A+
Sbjct: 519 SLLGHSLGALI--LFDIIRYQGNIKYSKLQLDFPVANFFAL 557


>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +1

Query: 280 LGPDVRGGLGRLLQSPGSALPWPSRLRDQLPPSNQIDAREILFYRH 417
           +G    GGLG LL        W    + Q   + QI ARE  FYRH
Sbjct: 103 IGTIASGGLGWLLGPSIGRKIWTLLHKSQ---ARQIAAREQEFYRH 145


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 571 FTDDGAERMADQIKSVPTKMLRDRVHSVHQIVYVDHQARREPV 443
           FTD      AD    V  K+L+  +  V+ ++ V H  R   V
Sbjct: 115 FTDHSLFGFADAGSIVTNKLLKFTMSDVNHVICVSHTCRENTV 157


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 371 RPLIKLMPEKFYFIGIDLPGCGKSD 445
           R  IK    KF+F+GID P  G SD
Sbjct: 218 RKAIKFPEHKFHFVGID-PEGGVSD 241


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 455 PGLMINIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGK-LYNLV 586
           PG+++ + D+V   +  A    +D FN    + GAII K L N++
Sbjct: 210 PGMLLVLQDVVQVGDVDASKQVFDVFNTFLIASGAIISKALGNII 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,913
Number of Sequences: 5004
Number of extensions: 48591
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)