Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5c13
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   3.5  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    27   3.5  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   6.1  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   6.1  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   8.1  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 594 KGIFKTTSCPAPCDYCPEYRKRQMKFAYS 680
           KGIF+T+S P+  D  P+  +R  K   S
Sbjct: 4   KGIFRTSSTPSIVDVTPDRGERPRKLVRS 32


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 441 DVENRIYSKNGLGSKVPRWKT-KHEYQP 521
           D+E + +S+N L  KV  +KT K EYQP
Sbjct: 364 DLEIKHFSRNCLNIKVMDFKTMKEEYQP 391


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 496  GKRNMSTSRLLVKFHLKNQLNRIVLRSTQ-LRNEREYLK 609
            G+R   +S   +KF  KN L+ I L + + L NE   LK
Sbjct: 1617 GQRQQGSSSHSMKFRSKNDLSSIKLSTKEGLENEENELK 1655


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 680 TVSELHLTLPVFRTVVTGRWT*SRFK 603
           TV   H+T  + R + TG W+  RFK
Sbjct: 434 TVHSDHITQGMVRALSTGNWSLKRFK 459


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -3

Query: 516 GTHVSFSIAALSIRDHSCCKSYSQHRRKRHV*YRNFLDPDWVSLQQRFSS*KNSRTVLLL 337
           G +++ S+ AL     +C  S  + RR++HV YR+      ++   +FS   N RT +++
Sbjct: 313 GANINRSLLALG----NCINSLCEPRRRQHVPYRD----SKLTRLLKFSLGGNCRTCMIV 364

Query: 336 ATHP 325
              P
Sbjct: 365 CISP 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,188
Number of Sequences: 5004
Number of extensions: 67147
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)