Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5c13
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0221 + 1447305-1447435,1448693-1449140                           33   0.30 
01_05_0490 + 22672241-22674679                                         29   4.8  
03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451     28   6.4  
11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369...    28   8.5  
02_01_0581 - 4307182-4307358,4307387-4307461,4307559-4307621,430...    28   8.5  

>02_01_0221 + 1447305-1447435,1448693-1449140
          Length = 192

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 474 LGSKVPRWKTKHEYQPPAREVPPEKP--AEQNCAPFNSTSKRKGIFKTTSCPAPCD 635
           LG+ + RW  + +     R  PP  P  + +     +STSK  G  K TS   PCD
Sbjct: 71  LGNMILRWLDRMKPSAQIRPHPPGPPNGSSEQFRHLSSTSKSTGAQKPTSKTLPCD 126


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 516 QPPAREVPPEKPAEQNCAPFNSTSKRKGIFKTTSCPAPCDYCP 644
           QPP+R  PP  P  Q   PF    +R  ++ T   P P    P
Sbjct: 657 QPPSRPAPPPPPPPQQQPPF--YPRRAVVYYTYPLPPPSPPLP 697


>03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451
          Length = 228

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 516 QPPAREVPPEKPAEQNCAP 572
           +PPARE PP  PA +  +P
Sbjct: 141 KPPAREAPPPPPAAEKLSP 159


>11_04_0359 +
           16735204-16735676,16736597-16736647,16736860-16736934,
           16737011-16737062,16737147-16737280,16737397-16737511,
           16737665-16737751,16737855-16737903,16738351-16738435,
           16738641-16738715,16738848-16739029,16739905-16739969
          Length = 480

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/22 (40%), Positives = 19/22 (86%)
 Frame = -1

Query: 530 TSRRLVLMFRFPSRHFRSETIL 465
           T++R+ ++F+FP R+F ++T+L
Sbjct: 249 TAQRVGIVFQFPERYFLADTVL 270


>02_01_0581 -
           4307182-4307358,4307387-4307461,4307559-4307621,
           4307715-4307819,4307917-4308024,4308123-4308260,
           4308357-4308446,4308533-4308658,4308728-4308781,
           4308865-4308936,4309060-4309167,4309272-4309343,
           4309456-4309518,4309747-4309908
          Length = 470

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 579 STSKRKGIFKTTSCPAPCDYCPEYRKRQMKFAYSFSGKKVLKCAV 713
           S  K+ G F +TSC +PC   PE  + +   +Y  +   V  C V
Sbjct: 155 SVLKKPGQFLSTSCGSPCYVAPEVIQHK---SYDGAAADVWSCGV 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,747,489
Number of Sequences: 37544
Number of extensions: 416071
Number of successful extensions: 1092
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)