Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5c13
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81543-3|CAB04425.1|  322|Caenorhabditis elegans Hypothetical pr...    32   0.35 
AL117199-3|CAB55043.3|  868|Caenorhabditis elegans Hypothetical ...    30   1.9  
AL032655-7|CAH60798.1|  329|Caenorhabditis elegans Hypothetical ...    30   1.9  
U42848-1|AAA83606.2|  345|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z48795-4|CAA88728.1|  236|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical...    29   4.4  
Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z71178-18|CAH04640.1|  671|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z71178-17|CAD44089.1|  898|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z71178-16|CAD44088.1|  328|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z71178-14|CAA94886.3|  894|Caenorhabditis elegans Hypothetical p...    28   5.8  
AL021478-4|CAJ26240.1|  671|Caenorhabditis elegans Hypothetical ...    28   5.8  
AL021478-3|CAF32233.1|  898|Caenorhabditis elegans Hypothetical ...    28   5.8  
AL021478-2|CAF32232.1|  328|Caenorhabditis elegans Hypothetical ...    28   5.8  
AL021478-1|CAC35857.2|  894|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF100664-2|AAC68984.1|  665|Caenorhabditis elegans Hypothetical ...    28   7.6  
AF014940-4|AAB63936.2|  322|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z81543-3|CAB04425.1|  322|Caenorhabditis elegans Hypothetical
           protein F49B2.3 protein.
          Length = 322

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +3

Query: 393 PNLGPGSYDIKRDAFYDVENRIYS-KNGLGSKVPRWKTKHEYQPPAREVPPEKPAEQNCA 569
           P LGP S    R    +  + ++     LGS+ PR      ++P     PP  P E + A
Sbjct: 218 PGLGPASCQKVRPRQSNTRDSVWDGSKKLGSRHPRSLKSQRFEPSQPPPPPPPPPEVSIA 277

Query: 570 PFNS 581
           P  S
Sbjct: 278 PATS 281


>AL117199-3|CAB55043.3|  868|Caenorhabditis elegans Hypothetical
           protein Y43F11A.5 protein.
          Length = 868

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 249 PRSFKYLGIN-RPLCIVNNRLGN 184
           PR+F Y GI  +P+CI  + LGN
Sbjct: 91  PRTFMYYGIGGKPICITTSELGN 113


>AL032655-7|CAH60798.1|  329|Caenorhabditis elegans Hypothetical
           protein Y6B3B.12 protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 528 REVPPEKPAEQNCAP-FNSTSKRKGIFKTTSCPAPCDYCPEYRKRQMKFAYS 680
           +E  PE P   N     +STS ++   +T +CP      P+ R    K AYS
Sbjct: 196 KEKEPENPCPLNVYERLSSTSYKRTSTRTLTCPKSAMDLPQTRASMAKMAYS 247


>U42848-1|AAA83606.2|  345|Caenorhabditis elegans Hypothetical
           protein C31H1.2 protein.
          Length = 345

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 483 KVPRWKTKHEYQPPAREVPPEKPAEQNCAPFNSTSKR 593
           +VPRW  K+EY  P  +   EK       P N T  R
Sbjct: 157 RVPRWIGKYEYDRPQFQFQLEKSCFMAIKPLNFTDLR 193


>Z48795-4|CAA88728.1|  236|Caenorhabditis elegans Hypothetical
           protein R05H5.5 protein.
          Length = 236

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 495 WKTKHEYQPPAREVPPEKPAEQNCAPFNSTSKRK---GIFKTTSC 620
           WKT+++ Q  +     E+ A  NC  F ST  +K   G+ + T C
Sbjct: 2   WKTRYKNQSASVSKEKEEFACVNCQEFTSTLYKKYSEGVIRLTEC 46


>Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical
           protein F35H8.2 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 527 SRRLVLMFRFPSRHFRSETILAVNPILNIVESVTFDIVTSWTQ 399
           SRRL  M      HF+ ET+   NP  N   S  F +  +W Q
Sbjct: 210 SRRLRDMVEMNGIHFKEETLANANP--NDTSSQLFQVSRNWLQ 250


>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
            protein F15E6.1 protein.
          Length = 1655

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +3

Query: 504  KHEYQPPAREVPPEKPAEQNCAPFNSTSKRKGIFK--TTSCPAPCDYCPEYRKRQMKFAY 677
            K E +P + + PP KP  QN  P   T +  GI +  + S        PE +K   K  +
Sbjct: 1456 KVEKKPKSPQKPPAKPTAQN-PPLKKTEEVDGIEREASESSSKESSVAPEEKKNPKKITF 1514

Query: 678  S 680
            +
Sbjct: 1515 A 1515


>Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 519 PPAREVPPEKPAEQNCAPFNSTSKRKG-IFKTTSCP 623
           PP    PPE  ++++C P   + K +G I +   CP
Sbjct: 194 PPDSIRPPESISKESCCPIRQSCKCRGSICRPAQCP 229


>Z71178-18|CAH04640.1|  671|Caenorhabditis elegans Hypothetical
           protein B0024.14e protein.
          Length = 671

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 519 PPAREVPPEKPAEQNCAPFNSTSKRKG-IFKTTSCP 623
           PP    PPE  ++++C P   + K +G I +   CP
Sbjct: 128 PPDSIRPPESISKESCCPIRQSCKCRGSICRPAQCP 163


>Z71178-17|CAD44089.1|  898|Caenorhabditis elegans Hypothetical
           protein B0024.14d protein.
          Length = 898

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 519 PPAREVPPEKPAEQNCAPFNSTSKRKG-IFKTTSCP 623
           PP    PPE  ++++C P   + K +G I +   CP
Sbjct: 128 PPDSIRPPESISKESCCPIRQSCKCRGSICRPAQCP 163


>Z71178-16|CAD44088.1|  328|Caenorhabditis elegans Hypothetical
           protein B0024.14c protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 519 PPAREVPPEKPAEQNCAPFNSTSKRKG-IFKTTSCP 623
           PP    PPE  ++++C P   + K +G I +   CP
Sbjct: 128 PPDSIRPPESISKESCCPIRQSCKCRGSICRPAQCP 163


>Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 519 PPAREVPPEKPAEQNCAPFNSTSKRKG-IFKTTSCP 623
           PP    PPE  ++++C P   + K +G I +   CP
Sbjct: 194 PPDSIRPPESISKESCCPIRQSCKCRGSICRPAQCP 229


>Z71178-14|CAA94886.3|  894|Caenorhabditis elegans Hypothetical
           protein B0024.14a protein.
          Length = 894

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 519 PPAREVPPEKPAEQNCAPFNSTSKRKG-IFKTTSCP 623
           PP    PPE  ++++C P   + K +G I +   CP
Sbjct: 128 PPDSIRPPESISKESCCPIRQSCKCRGSICRPAQCP 163


>AL021478-4|CAJ26240.1|  671|Caenorhabditis elegans Hypothetical
           protein B0024.14e protein.
          Length = 671

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 519 PPAREVPPEKPAEQNCAPFNSTSKRKG-IFKTTSCP 623
           PP    PPE  ++++C P   + K +G I +   CP
Sbjct: 128 PPDSIRPPESISKESCCPIRQSCKCRGSICRPAQCP 163


>AL021478-3|CAF32233.1|  898|Caenorhabditis elegans Hypothetical
           protein B0024.14d protein.
          Length = 898

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 519 PPAREVPPEKPAEQNCAPFNSTSKRKG-IFKTTSCP 623
           PP    PPE  ++++C P   + K +G I +   CP
Sbjct: 128 PPDSIRPPESISKESCCPIRQSCKCRGSICRPAQCP 163


>AL021478-2|CAF32232.1|  328|Caenorhabditis elegans Hypothetical
           protein B0024.14c protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 519 PPAREVPPEKPAEQNCAPFNSTSKRKG-IFKTTSCP 623
           PP    PPE  ++++C P   + K +G I +   CP
Sbjct: 128 PPDSIRPPESISKESCCPIRQSCKCRGSICRPAQCP 163


>AL021478-1|CAC35857.2|  894|Caenorhabditis elegans Hypothetical
           protein B0024.14a protein.
          Length = 894

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 519 PPAREVPPEKPAEQNCAPFNSTSKRKG-IFKTTSCP 623
           PP    PPE  ++++C P   + K +G I +   CP
Sbjct: 128 PPDSIRPPESISKESCCPIRQSCKCRGSICRPAQCP 163


>AF100664-2|AAC68984.1|  665|Caenorhabditis elegans Hypothetical
           protein M57.1 protein.
          Length = 665

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 315 GLARDVL--PIKGPCVSSFMKRNVAEVRPNLGPGSYDIKRDAFYDVENRIYSKNGLGSK 485
           G+ R ++  P  GP  + FM+  +   +  + P    +   AF   E R +++NG GS+
Sbjct: 243 GIRRHIMSKPATGPEYTRFMEFLIETTKDAVEPMKVPLVLKAFKRQEGRKFTENGYGSR 301


>AF014940-4|AAB63936.2|  322|Caenorhabditis elegans Hypothetical
           protein W02D7.6 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 528 REVPPEKPAEQNCAPFNSTSKRKGIFKTTSCPA-PCDYCPEYRKRQMKFAYSFS 686
           R+   E+P E++     +T+ R  + +TT C A P +YC    + +   A  F+
Sbjct: 94  RKAYAEQPIEESLVLPQATTARPNMRRTTGCVACPVEYCQYLFQTRANLAEHFT 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,722,850
Number of Sequences: 27780
Number of extensions: 380126
Number of successful extensions: 1030
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)