Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5c11
(527 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 32 0.22
AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical ... 30 1.2
AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effe... 30 1.2
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 25 2.8
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 25 2.8
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 25 2.8
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 28 3.6
AC006729-5|AAK84599.2| 568|Caenorhabditis elegans Hypothetical ... 28 3.6
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 28 4.8
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 28 4.8
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 28 4.8
CU457740-11|CAM36341.1| 353|Caenorhabditis elegans Hypothetical... 27 8.3
AF068709-2|AAC19251.2| 429|Caenorhabditis elegans Hypothetical ... 27 8.3
AF068709-1|AAQ91906.1| 449|Caenorhabditis elegans Hypothetical ... 27 8.3
AF025453-10|AAK31402.3| 487|Caenorhabditis elegans Hypothetical... 27 8.3
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 32.3 bits (70), Expect = 0.22
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Frame = +3
Query: 237 PNCPCRSCCCGKPPIVKPCYKQPKIPESYAPRRCYIKPSAPVEG-CTTYKLSYLPVDGCK 413
P P S CCG P+ PC P P AP C P P K + +P + C
Sbjct: 91 PPPPPASPCCGPSPVPAPCCPPPPAPA--AP--CCPPPPPPTPSPLVCCKQAPVPENPCC 146
Query: 414 NLRGEVKKPSPNIVPSC 464
+ P P+ P+C
Sbjct: 147 QIVAAAMPPPPS-APAC 162
>AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical
protein Y2H9A.1 protein.
Length = 898
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 165 CLPCPAAGIKSGLRDGKPIDGDMRPNCPCRSCCCGKP 275
C C SG R+ + ++G P+ C SC CG P
Sbjct: 322 CKTC-CRSFHSGCREVETLNGKPIPDDQCESCVCGDP 357
>AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effect
sterile 4 protein.
Length = 898
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 165 CLPCPAAGIKSGLRDGKPIDGDMRPNCPCRSCCCGKP 275
C C SG R+ + ++G P+ C SC CG P
Sbjct: 322 CKTC-CRSFHSGCREVETLNGKPIPDDQCESCVCGDP 357
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 25.0 bits (52), Expect(2) = 2.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 363 EGCTTYKLSYLPVDGCK 413
E CTT Y P++GCK
Sbjct: 1163 ENCTTNAWDYHPLNGCK 1179
Score = 21.8 bits (44), Expect(2) = 2.8
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = +3
Query: 162 ECLPCPAAGIKSGLRDGKPI-----DGDMRPNC 245
EC PCPA G DG + G+M NC
Sbjct: 1133 ECEPCPAPGQVCDPIDGSCVCPPNTVGEMCENC 1165
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 25.0 bits (52), Expect(2) = 2.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 363 EGCTTYKLSYLPVDGCK 413
E CTT Y P++GCK
Sbjct: 1163 ENCTTNAWDYHPLNGCK 1179
Score = 21.8 bits (44), Expect(2) = 2.8
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = +3
Query: 162 ECLPCPAAGIKSGLRDGKPI-----DGDMRPNC 245
EC PCPA G DG + G+M NC
Sbjct: 1133 ECEPCPAPGQVCDPIDGSCVCPPNTVGEMCENC 1165
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 25.0 bits (52), Expect(2) = 2.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 363 EGCTTYKLSYLPVDGCK 413
E CTT Y P++GCK
Sbjct: 1163 ENCTTNAWDYHPLNGCK 1179
Score = 21.8 bits (44), Expect(2) = 2.8
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = +3
Query: 162 ECLPCPAAGIKSGLRDGKPI-----DGDMRPNC 245
EC PCPA G DG + G+M NC
Sbjct: 1133 ECEPCPAPGQVCDPIDGSCVCPPNTVGEMCENC 1165
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +3
Query: 252 RSCCCGKPPIVKPC---YK--QPKIPESYAPRRCYIKPS 353
+ CCC PP PC Y+ P P SYA Y PS
Sbjct: 34 QQCCCPPPPPPPPCGGGYEAPPPPPPPSYAGGPSYAGPS 72
>AC006729-5|AAK84599.2| 568|Caenorhabditis elegans Hypothetical
protein Y24D9A.2 protein.
Length = 568
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 252 RSCCCGKPPIVKPCYKQPKIPESYAPRRCYIKPSAPVEGC-TTYKLSYLPV 401
R CC PIV PCY+ K P +R P EGC T S+ P+
Sbjct: 273 RCTCCSSKPIV-PCYENEKCPCFIMNQRMQ-GFQIPREGCGKTEFTSFKPI 321
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 302 LLVTRLNNGRFPTAARSAWAVRSHVAVNG 216
+++ L+ G FPT +AWA+ S+V ++G
Sbjct: 365 MIIHLLDRGDFPTQKEAAWAI-SNVTISG 392
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 302 LLVTRLNNGRFPTAARSAWAVRSHVAVNG 216
+++ L+ G FPT +AWA+ S+V ++G
Sbjct: 365 MIIHLLDRGDFPTQKEAAWAI-SNVTISG 392
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 302 LLVTRLNNGRFPTAARSAWAVRSHVAVNG 216
+++ L+ G FPT +AWA+ S+V ++G
Sbjct: 274 MIIHLLDRGDFPTQKEAAWAI-SNVTISG 301
>CU457740-11|CAM36341.1| 353|Caenorhabditis elegans Hypothetical
protein C50E10.11 protein.
Length = 353
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 26 FVLIFFLFS*NVLKSFQFISYFDIFLELYFLYDN 127
F+ I F+F+ ++ F F FDIF+ +YF +DN
Sbjct: 256 FIGIIFVFTCVIILVFDFFPEFDIFI-VYF-FDN 287
>AF068709-2|AAC19251.2| 429|Caenorhabditis elegans Hypothetical
protein C24B9.3a protein.
Length = 429
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +3
Query: 375 TYKLSYLPVDGCKNLRGEVKKPSPNIVPSCEPMEGCTVQKLSY 503
TY +++ C ++ P+P VP+ P C + L+Y
Sbjct: 208 TYVSAWMAALCCPGVQFSTVSPAPTTVPTQSPSVSCPLASLTY 250
>AF068709-1|AAQ91906.1| 449|Caenorhabditis elegans Hypothetical
protein C24B9.3b protein.
Length = 449
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +3
Query: 375 TYKLSYLPVDGCKNLRGEVKKPSPNIVPSCEPMEGCTVQKLSY 503
TY +++ C ++ P+P VP+ P C + L+Y
Sbjct: 228 TYVSAWMAALCCPGVQFSTVSPAPTTVPTQSPSVSCPLASLTY 270
>AF025453-10|AAK31402.3| 487|Caenorhabditis elegans Hypothetical
protein C08F1.1 protein.
Length = 487
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 133 EKHFTDKSCLSVYHAQRRVSS 195
E HFT+KSC S+ H R VSS
Sbjct: 268 ETHFTEKSC-SLSHTIRNVSS 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,598,256
Number of Sequences: 27780
Number of extensions: 325024
Number of successful extensions: 843
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -