Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5c04
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.0  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   3.1  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    25   5.5  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    24   7.2  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    24   9.6  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    24   9.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +1

Query: 4    PSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYA 156
            PS      P P +  P   PP + P  P  S+G      P  A P P   A
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSA 1224



 Score = 25.4 bits (53), Expect = 3.1
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 4    PSRAATRAPGPGSHAPE-RCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYA 156
            P   A   P P +  P    P  K P  PA S  A     PR + P+P++ A
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNA 1263


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 282 RFRPVYVSVPLEVDRRSRRLGFSL 211
           R+    + V L   R SRRLGF+L
Sbjct: 344 RYNEALIDVSLRQSRMSRRLGFTL 367


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
 Frame = +1

Query: 76  PRAPAYSMGARLGFAPRRAGP-APNAYALKLG-SGSPAYTMGARVGFQAKAKSPGPAVYF 249
           P  PA   G  L      + P +    ++ LG + +P  T  A    Q+K ++P P V  
Sbjct: 108 PPKPAIPKGKVLSLGGNTSAPKSTKPISISLGGTKAPTTTKPAAPAAQSKTETPAPKVTS 167

Query: 250 QRDANVYRTKPP 285
           +         PP
Sbjct: 168 ESTKKETAAPPP 179


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 115 FAPRRAGPAPNAYALKLGSGSPAYTMGARVGFQAKAKSPGPAVYFQR 255
           FA +R GP P+   LK+   +     GA+ GF        P   F R
Sbjct: 356 FAMQRYGPPPSYPDLKIPGVNCPIPTGAQWGFHPGGWGKPPVDQFNR 402


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 114 AESSAHGVGRSAGVLHRGAALGSV 43
           AE+  H +GRS    HRG A+  +
Sbjct: 362 AETYLHRIGRSGRFGHRGLAISFI 385


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 71  FIGGQRSGACEPGPGARVAARD 6
           F+ G +   CEP P  R+  RD
Sbjct: 581 FVKGAQVAYCEPSPVLRLRTRD 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,232,323
Number of Sequences: 5004
Number of extensions: 20219
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)