Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5c04
         (386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    30   0.49 
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    30   0.49 
Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    30   0.65 
AC024790-11|AAF60631.1|  199|Caenorhabditis elegans Hypothetical...    29   0.86 
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      28   2.6  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z78412-8|CAB01653.1|  400|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z70756-10|CAI46587.1|  228|Caenorhabditis elegans Hypothetical p...    27   3.5  
U58764-3|AAB00725.1|  122|Caenorhabditis elegans Hypothetical pr...    27   3.5  
AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical ...    27   3.5  
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z81076-7|CAB03058.1|  411|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AF016687-1|AAC48094.2|  315|Caenorhabditis elegans Dumpy : short...    27   6.1  
Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U40028-5|AAA81116.1|  137|Caenorhabditis elegans Hmg protein 11 ...    26   8.1  
AF056578-1|AAC78600.1|  137|Caenorhabditis elegans high mobility...    26   8.1  

>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
 Frame = +1

Query: 4    PSRAATRAPGPGSHAPERCP--PMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKLGS-- 171
            PS + T +P     +P+  P  P   P +P Y+  +  GF+  +  P    Y+    S  
Sbjct: 1735 PSYSPT-SPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYT 1793

Query: 172  -GSPAYTMGARVGFQAKAKSPGPAVYFQRDANVYRTKPPMYS 294
              SP Y+  +     + ++ PG +  +   +  Y    P YS
Sbjct: 1794 PSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYS 1835


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
 Frame = +1

Query: 4    PSRAATRAPGPGSHAPERCP--PMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKLGS-- 171
            PS + T +P     +P+  P  P   P +P Y+  +  GF+  +  P    Y+    S  
Sbjct: 1742 PSYSPT-SPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYT 1800

Query: 172  -GSPAYTMGARVGFQAKAKSPGPAVYFQRDANVYRTKPPMYS 294
              SP Y+  +     + ++ PG +  +   +  Y    P YS
Sbjct: 1801 PSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYS 1842


>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +1

Query: 7   SRAATRAPGPGSHAPE----RCPPMKDPRAPAYSM 99
           +RA +RAP P S + E    R  P K P APAY++
Sbjct: 384 ARAPSRAPAPSSTSRETRSTRRSPSKGPSAPAYTL 418


>AC024790-11|AAF60631.1|  199|Caenorhabditis elegans Hypothetical
           protein Y47D7A.12 protein.
          Length = 199

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +1

Query: 4   PSRAATRAPGPGSHAPERCPPMKDPRAPA-YSM-GARLGFAPRRAGPAPNAYALKLGSGS 177
           P   AT+   P + AP   PP+  P AP+ YS   A +      + PAP   A  +GS S
Sbjct: 47  PGAYATKHSFPQNSAPVTAPPLPPPPAPSGYSSDDASVTSNVAASPPAPPTDAQIVGSSS 106

Query: 178 PAYTMG 195
            +   G
Sbjct: 107 SSTNYG 112


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +1

Query: 7   SRAATRAPGPG--SHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKLGSGSP 180
           S+A TRAP P   + AP R  P K P+A   +     G   R A   P +      + +P
Sbjct: 364 SKAPTRAPIPARSAPAPPRGAPAKAPKAEPIAQKKVAGKVQRAAPSKPASAVSAPKATAP 423

Query: 181 AYTMGA 198
           A T  A
Sbjct: 424 ASTSSA 429


>Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical
           protein F56A8.6 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
 Frame = +1

Query: 4   PSRAATRAPGPGSH---APERCPPMKDPRAPAYSMGARLGFAPRRAGPAP 144
           P +     PGP       P   PPM  P+AP Y        AP++  P P
Sbjct: 224 PPKPTFAHPGPSMGPPMGPPMGPPMGHPQAPQYGQNYGQPVAPQQYKPPP 273


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = +1

Query: 4   PSRAATRAP--GPGSHAP----ERCPPMKDPRAPAYSMGARLGF 117
           PSRA   +P   P +H P     RCPP   PR P+  +   + F
Sbjct: 240 PSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPSMKLPDPIAF 283


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = +1

Query: 4   PSRAATRAP--GPGSHAP----ERCPPMKDPRAPAYSMGARLGF 117
           PSRA   +P   P +H P     RCPP   PR P+  +   + F
Sbjct: 240 PSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPSMKLPDPIAF 283


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 4   PSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAR-LGFAPRRAGPAPN 147
           P R     P P +  P   PP   P AP    G++  G  P R+G  PN
Sbjct: 128 PPRTCCPPPTPAAPPPPPPPPPPAPEAPTQCCGSQPYGRTPCRSG-CPN 175


>Z78412-8|CAB01653.1|  400|Caenorhabditis elegans Hypothetical
           protein M176.8 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 130 AGPAPNAYALKLGSGSPA-YTMGARVGF 210
           AGP PN + +  G  SP  Y +GAR  F
Sbjct: 219 AGPWPNQWGVPTGPSSPMFYNIGARKNF 246


>Z70756-10|CAI46587.1|  228|Caenorhabditis elegans Hypothetical
           protein T06E4.12 protein.
          Length = 228

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 61  PPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKLGSGSPAYTMGARVGF 210
           P +  P  PA++    +   P  A PA  A+A  + +  PAY   AR  F
Sbjct: 167 PVLAAPAIPAFAPAPIIAPRPVLAAPAIPAFAPAVPAAIPAYAPFARSAF 216


>U58764-3|AAB00725.1|  122|Caenorhabditis elegans Hypothetical
           protein M03E7.2 protein.
          Length = 122

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
 Frame = +1

Query: 61  PPMKDPRAPAYSMGARLGFAP-RRAGPAPNAYALK-LGSGSPAYTMGARVGFQAKAKSP 231
           PPM  P    Y MG   G +P    GP      +   G G   Y MG+  G  +    P
Sbjct: 58  PPMPPPGMSPYGMGGMGGMSPYGMMGPMGGMGGMSPYGGGMSPYGMGSMGGMGSSMSFP 116


>AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.2 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +1

Query: 4   PSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLG 114
           P+  A RA G G+    R PP   PRA   S G RLG
Sbjct: 217 PAPGAPRAGGSGAGGAPRPPPPAGPRAFGGS-GQRLG 252


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 4   PSRAATRAPGPGSHAPERCPP 66
           P+RAA RAPGP    P    P
Sbjct: 112 PTRAAPRAPGPSGPPPSASAP 132


>Z81076-7|CAB03058.1|  411|Caenorhabditis elegans Hypothetical
           protein F35C5.6 protein.
          Length = 411

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 200 GSGSKLKPSLRDLRSTSRGTLTYTGRN 280
           G+G+++     D RST  G +TY GR+
Sbjct: 88  GNGTRIGNQYSDPRSTRLGLVTYNGRS 114


>AF016687-1|AAC48094.2|  315|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 9 protein.
          Length = 315

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
 Frame = +1

Query: 25  APGPGSHAPERCPP----------MKDPRAPAYSMG--ARLGFAPRRAGPAPNAYALKLG 168
           AP PG++A ++CP            K PR PA   G   RLG   R   P P     + G
Sbjct: 129 APPPGTNACQKCPTGAPGPPGLPGPKGPRGPAGIEGKPGRLGEDNRPGPPGPPGVRGEPG 188

Query: 169 SGSPAYTMGARVGFQAKAKSPGP 237
           S       G R G       PGP
Sbjct: 189 SPGEKGPTGDR-GKVLNGAPPGP 210


>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical
           protein F54B11.2 protein.
          Length = 304

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 89  AGARGSFIGGQRSGACEPGP 30
           AGA G+  GGQ  G C PGP
Sbjct: 92  AGA-GASSGGQCEGCCNPGP 110


>U40028-5|AAA81116.1|  137|Caenorhabditis elegans Hmg protein 11
           protein.
          Length = 137

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = +1

Query: 25  APGPGSHAPERCPPMKD-----PRAPAYSMGARLGFAPRRAGPAPNAYALKLGSGSPAYT 189
           AP P S AP   P   D     P A +    +    +P+R+  AP +YA  + +  PA T
Sbjct: 55  APKPYSGAPRGRPRKSDQVAKSPVAKSPVASSSADASPKRSRGAPKSYAEDVAATKPAKT 114


>AF056578-1|AAC78600.1|  137|Caenorhabditis elegans high mobility
           group protein I alpha protein.
          Length = 137

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = +1

Query: 25  APGPGSHAPERCPPMKD-----PRAPAYSMGARLGFAPRRAGPAPNAYALKLGSGSPAYT 189
           AP P S AP   P   D     P A +    +    +P+R+  AP +YA  + +  PA T
Sbjct: 55  APKPYSGAPRGRPRKSDQVAKSPVAKSPVASSSADASPKRSRGAPKSYAEDVAATKPAKT 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.133    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,230,367
Number of Sequences: 27780
Number of extensions: 133055
Number of successful extensions: 441
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)