Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5c04
         (386 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   4.9  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    20   8.6  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    20   8.6  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 88  AYSMGARLGFAPRRAGPAPNAYAL 159
           A  +G  LGF  R A P P +  L
Sbjct: 72  AVLVGLILGFLGRLANPTPQSITL 95


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 276 RPVYVSVPLEVDRRSRR 226
           RPVY+S P     R RR
Sbjct: 101 RPVYISQPRPPHPRLRR 117



 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 276 RPVYVSVPLEVDRRSRR 226
           RPVY+S P     R RR
Sbjct: 157 RPVYISQPRPPHPRLRR 173


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 209 SKLKPSLRDLRSTSRGTLTYTGRNRQCTR 295
           +K++P+L +  +T R     + R  QC R
Sbjct: 156 AKVEPALEEQFATGRVLACISSRPGQCGR 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.133    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,380
Number of Sequences: 438
Number of extensions: 2431
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)