Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5c01
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    29   0.53 
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    28   1.2  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   1.6  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    27   2.8  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    27   2.8  
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    26   3.8  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    25   8.7  
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar...    25   8.7  

>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 304 SIECYFYFVFQSNQFPLKH**YHIFFVFV*QPINW*QFLNPKHRLL 167
           S+EC+  FV++S  F       H     + +P+ +  FL P   LL
Sbjct: 609 SLECFRIFVYRSALFAFNKSNVHEIIQLLNEPVKYHNFLKPSEALL 654


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
 Frame = +1

Query: 169 KDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKRS--------KNSIQWRGAGPDY 324
           ++GV+ +  ATN    R+K  +YD  +    IG++   S        + +I+ +  GPDY
Sbjct: 227 ENGVIGILDATNSTHERRKH-LYDRISKEADIGIMFLESLCTDDILFEENIKLKIKGPDY 285

Query: 325 DKNEIGKKVMGLRKQLSYLDEHERLLDRRTRQ 420
           +  +    +  LR+++    ++   LD R  Q
Sbjct: 286 EGYDTESALKDLRERVDLYKKYYEPLDERDEQ 317


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 148 VSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGL 270
           V++ QKAK      K A N +  +++R I  ITN++    L
Sbjct: 460 VTIFQKAKHTKHSFKAAYNEIRHKKQRLIKQITNIMHNFNL 500


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +1

Query: 58  KIYVFCLILAMTDLKYKRYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQK 225
           K Y   L   M  LKY++ EKS  ++ +K +  L +A+   + L+   N ++ + +
Sbjct: 31  KYYQSALDYFMMALKYEKNEKSKEIIRSKVIEYLDRAEKLKVYLQEKNNQISSKSR 86


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 367 VFLIPLPFYQFHFYHNRDLLLSIECYF-YFVF 275
           + L+PL F  F F     LL ++  YF  F+F
Sbjct: 485 ILLVPLQFISFRFNRRLSLLFAVLTYFSTFIF 516


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 325 DKNEIGKKVMGLRKQLSYLDEHERLLDRRTRQ 420
           DKN +  K +   K L  LDE  R L  RT +
Sbjct: 109 DKNALDAKFLEAHKILENLDEQTRKLSERTEK 140


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 289 NSIQWRGAGPDYDKNEI 339
           N+I WR  G  Y KNE+
Sbjct: 154 NAISWRSEGIHYRKNEV 170


>SPAC1071.09c |||DNAJ domain protein, DNAJC9
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 151 SLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLE 258
           +L ++ K G  D +  + L+  RQK R+Y++ + LE
Sbjct: 227 NLKKRRKAGASDEEALSALIRSRQKSRMYNLISNLE 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,042
Number of Sequences: 5004
Number of extensions: 51617
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)