Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5b24
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 322 4e-89
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 181 7e-47
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 172 3e-44
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 127 1e-30
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 94 2e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 92 7e-20
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 84 2e-17
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 50 2e-07
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.085
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 29 0.60
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.2
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 26 4.2
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.2
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.6
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.4
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 25 7.4
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.7
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 25 9.7
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ... 25 9.7
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 9.7
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 9.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 322 bits (790), Expect = 4e-89
Identities = 147/162 (90%), Positives = 154/162 (95%)
Frame = +2
Query: 167 DEXVAALVVXNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 346
+E +AALV+ NGSGMCKAGFA DDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 347 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 526
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 527 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 652
I+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTV
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTV 163
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 181 bits (441), Expect = 7e-47
Identities = 82/157 (52%), Positives = 113/157 (71%), Gaps = 1/157 (0%)
Frame = +2
Query: 185 LVVXNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 364
+ + NGSG KAGFA DD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 365 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 541
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 542 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 652
N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+V
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSV 168
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 172 bits (419), Expect = 3e-44
Identities = 80/160 (50%), Positives = 115/160 (71%), Gaps = 2/160 (1%)
Frame = +2
Query: 179 AALVVXNGSGMCKAGFAXDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 352
A +V+ NG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 353 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 532
+L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + M
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETM 123
Query: 533 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 652
FE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H V
Sbjct: 124 FERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIV 163
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 127 bits (307), Expect = 1e-30
Identities = 74/188 (39%), Positives = 103/188 (54%), Gaps = 32/188 (17%)
Frame = +2
Query: 185 LVVXNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 313
+++ NG+G K G+A +DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 314 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 472
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 473 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDS 628
LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186
Query: 629 GDGVSHTV 652
GDGV+H +
Sbjct: 187 GDGVTHII 194
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 93.9 bits (223), Expect = 2e-20
Identities = 50/159 (31%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Frame = +2
Query: 185 LVVXNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 364
LV+ NGS +AG+ + P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 365 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 541
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 542 FNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTV 652
+N P++ I + S Y + + ++GIVL+ G+ SH +
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 91.9 bits (218), Expect = 7e-20
Identities = 52/154 (33%), Positives = 81/154 (52%)
Frame = +2
Query: 170 EXVAALVVXNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 349
+ V+A+V+ GS + GF+ +D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 350 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 529
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 530 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 631
MFE+ PA Y+A Q + +ASG+ T ++D G
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIG 154
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 83.8 bits (198), Expect = 2e-17
Identities = 47/163 (28%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Frame = +2
Query: 170 EXVAALVVXNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 349
E + +LV+ GS + G+A +++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 350 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 523
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 524 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG-DGVSHT 649
+ FE + PA Y+ QAV +A+ ++T +++D G D S T
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVT 164
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 50.4 bits (115), Expect = 2e-07
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = +2
Query: 371 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 538
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 539 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 631
P +A + ++ LYA G G+V+D G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.085
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 431 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 574
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.1 bits (62), Expect = 0.60
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 242 PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 373
PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 506 PRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 473 LLTEAPLNPKANREKMTQIMFETFN 547
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 26.2 bits (55), Expect = 4.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +3
Query: 597 PVVPPVSCWTPATVSPTPW 653
PV+PPV + P + P W
Sbjct: 235 PVLPPVEIYDPEDIKPADW 253
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 338 VPRLLRTSPSVPYRPSRPDGGAFPRSRGTR 249
+ +L+ +PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 367 FEGQDTSFALCLVSYVRVLLSHTDHHA 287
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 487 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 636
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +3
Query: 552 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPWP 656
PP P + T PV PV+ A P P P
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAP 401
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 197 NGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 349
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 286 GRDGRYGTEGLVRRR 330
GRDGRY +E L RR+
Sbjct: 186 GRDGRYKSEDLKRRK 200
>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 653 PRCGRHRRRSPARYRWYDRTRTARARL 573
P GRHR +PA W+++ R + +++
Sbjct: 92 PASGRHRFGNPAFRIWHEKLRDSASQI 118
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 573 KPCSRCTRPVVPPVSCWTPATVSPTPWPI 659
KP S+ TRP +P +T T S P PI
Sbjct: 65 KPSSKATRPYIP---SYTRLTYSVPPLPI 90
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 290 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 376
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,645
Number of Sequences: 5004
Number of extensions: 63172
Number of successful extensions: 201
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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