Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5b23
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    50   3e-07
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    29   0.61 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   1.4  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   1.8  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.4  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   3.2  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    26   4.3  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   4.3  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    25   7.5  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   9.9  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    25   9.9  

>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
 Frame = +3

Query: 201 KQLLKEARKHIDEKNYKDAQECCKNLLRKDKQNYFGLVLLGKSFQDSDQACL---AYQKA 371
           K  LK A++ +  KNY+ A E  K  L  D  NY   V LG ++  + Q      AY  A
Sbjct: 3   KPALKAAKEALVVKNYELAIEQSKKALSFDANNYNANVFLGVAYFSTKQLSESKEAYLDA 62

Query: 372 IACKPSHPLAWLGLASYYEAHDDQIMNVKLLPVYV-EILKLQIEEEKALEIISKIGKLGV 548
           I       LAW GL + YE+  D     K+ P+   + L+L+ E+ K L  ++K  ++  
Sbjct: 63  IKIDEKAVLAWQGLWNLYESTHDISELHKITPILASKFLELE-EQNKCLNTVNKYMEVVK 121

Query: 549 RYKN 560
           +Y N
Sbjct: 122 KYGN 125



 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 303 FGLVLLGKSFQDS-DQACLAYQKAIACKPSHPLAWLGLASYYEAHDDQIMNVKLLPVYVE 479
           +G+ +L +  ++  + +  A+  ++   P++  A+  L  YY    D +   K      E
Sbjct: 544 YGIYILNRKSENYLEDSFSAFVSSLRKDPNYAPAYTSLGLYYRDIHDMVRATKCFQKAFE 603

Query: 480 ILKLQIEEEKAL 515
           +   Q+E  +AL
Sbjct: 604 LDASQVEAAEAL 615


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +3

Query: 252 DAQECCKNLLRKDKQNYFGLVLLGKSFQDSDQACLAYQKAIACKPSHPLAWLGLAS 419
           +A E  ++L+  +++ +  +  L + F D D+A  AY+ A+   P    A L +A+
Sbjct: 321 NAPESVRHLISLNEETWIQIGRLAELFDDQDKALSAYESALRQNPYSIPAMLQIAT 376


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = -3

Query: 263  LLSIFVIFFINMLPCLLQQL 204
            ++SIF++FFI+ +P  +Q+L
Sbjct: 1395 IISIFIVFFISFVPLTVQEL 1414


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 273 NLLRKDKQNYFGLVLLGKSFQDSDQACLAYQKAIACKP 386
           +L  KD + +F    L +S +  DQA   Y +A++ KP
Sbjct: 199 HLKPKDHELWFTCAKLSESLEFWDQADYCYNRAVSAKP 236



 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 228 HIDEKNYKDAQECCKNLLRKDKQNYFGLVLLGK--SFQDSDQACL 356
           +++ K Y+ AQ+C + +L  D  N   L+ L +    QD+  A L
Sbjct: 476 YLELKEYEHAQQCMEAILIVDNSNTNALIKLAEINELQDNRDAAL 520


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 553  YLTPNFPIFEMISRAFSSSICNFNISTYTGSSLTFMI 443
            +  P FP  E+I    S+ +  FN+S Y    + + +
Sbjct: 1450 FTLPGFPSIELIPDGASTPVTTFNVSDYLNYVIDYTV 1486


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 263  LLSIFVIFFINMLPCLLQQL 204
            ++SIF++FFI+ LP ++  L
Sbjct: 1329 IISIFIVFFISFLPLVVHDL 1348


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 31/112 (27%), Positives = 54/112 (48%)
 Frame = +3

Query: 195  DIKQLLKEARKHIDEKNYKDAQECCKNLLRKDKQNYFGLVLLGKSFQDSDQACLAYQKAI 374
            +++QLLK         NY   +E   NL RK +Q+YF   +   +F   ++A      + 
Sbjct: 3251 NVQQLLKRDDFIPKILNYNLEKELSINLRRKIEQDYFSNPIF--TFDSVNRA------SK 3302

Query: 375  ACKPSHPLAWLGLASYYEAHDDQIMNVKLLPVYVEILKLQIEEEKALEIISK 530
            AC P   L W+     Y     +++  KL P+  E+ +L++E++ A E I +
Sbjct: 3303 ACGPL--LLWIKSICNY----SKVLE-KLEPLNSEVDRLKLEQKNAEECIQE 3347


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 444  FDRHGLHNSWLILA-KLRGDWVYMQLLFDMLNTPGQNLGRIYLVTLTQNSFVY 289
            F  HG  NSW +LA  + G+W       DM  + G+N  R +   L  +S V+
Sbjct: 1205 FSLHGWINSWYLLALVMHGEW-------DMAISYGENFKREFKNALLTSSRVF 1250


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 225 KHIDEKNYKDAQECCKNL--LRKDKQNYF 305
           K IDEKN+ DA    KNL   R DK + F
Sbjct: 511 KAIDEKNHMDATLYLKNLNGFRHDKMSTF 539


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 237 EKNYKDAQECCKNLLRKDKQNYFGLVLLGKSF---QDSDQACLAYQKAIACKPSHPLAWL 407
           ++ +  A +C    ++ D    +   L G      ++ +++  +++KAI     H  AW 
Sbjct: 444 QREHSQALKCINRAIQLDPTFEYAYTLQGHEHSANEEYEKSKTSFRKAIRVNVRHYNAWY 503

Query: 408 GLASYY 425
           GL   Y
Sbjct: 504 GLGMVY 509


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 270 YSTLEHLCNFFHQYASLPPSTVV 202
           +STLE +   +++Y SLPP  ++
Sbjct: 462 FSTLEDVVEEYNKYESLPPGLLI 484


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 293 FIFSKEVFTALLSI-FVIFFINMLPCLLQQLFNISHFLRMLFNNI*FKLY 147
           F  S E+  ++ ++ FV++ ++ L  ++ + F +SH LR  F  + F LY
Sbjct: 529 FAISGEISHSINNLEFVLYSLSSLFLMMLKWFRLSHVLR--FERLAFLLY 576


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 501 EEKALEIISKIGKLGVRYKNGDVVETLINYLKEEPPTTL---RKSAEEQLICLINENIP 668
           EE  L  + + G  G+ Y  G +++TL+N LKE     +   R  A+E+ I  I E  P
Sbjct: 157 EEGLLHSLRESGVRGM-YTEGHLLKTLVNPLKEIESLEVIIYRNDAKEEDIKTIQEIRP 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,708
Number of Sequences: 5004
Number of extensions: 47128
Number of successful extensions: 145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)