Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5b23
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327... 43 3e-04
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213... 36 0.039
08_02_1146 + 24678142-24678258,24678550-24678587,24678997-246790... 30 1.5
08_02_0077 - 11979497-11979654,11980012-11982178 29 3.3
03_02_0950 + 12661008-12662312,12662403-12662576 29 3.3
01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742... 29 3.3
12_01_0715 - 6230393-6231559,6233234-6234553 28 7.7
>01_05_0712 -
24531654-24531874,24532438-24532538,24532621-24532716,
24532951-24533048,24533827-24533883,24534764-24534895,
24535042-24535155,24535227-24535359,24535448-24535678,
24535761-24535843,24536009-24536137,24536504-24536599,
24536719-24536773,24537316-24537386,24537472-24537525,
24537691-24537768,24537985-24538117,24539381-24539496,
24539580-24539651,24540113-24540218,24540657-24540772,
24541170-24541319,24541410-24541492,24541591-24541669,
24542645-24542695
Length = 884
Score = 42.7 bits (96), Expect = 3e-04
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 5/144 (3%)
Frame = +3
Query: 237 EKNYKDAQECCKNLLRKDKQNYF---GLVLLGKSFQDSDQACLAYQKAIACKPSHPLAWL 407
++ Y++A +C +N LR D N L LL +D Q+ + KP+H + W+
Sbjct: 90 DREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLSGFVETRQQLLTLKPNHRMNWI 149
Query: 408 GLASYYEAHDDQIMNVKLLPVYVEILK--LQIEEEKALEIISKIGKLGVRYKNGDVVETL 581
G A + + +++L Y L+ E E+ + K+ + + G + L
Sbjct: 150 GFAVAHHLSSNSSKAIEVLEAYEGTLEDDYPPENERYEHSEMLLYKISLFEECGMLDRAL 209
Query: 582 INYLKEEPPTTLRKSAEEQLICLI 653
K+E + S +EQ+ C++
Sbjct: 210 EEMQKKESKIVDKLSFKEQMACIL 233
>04_03_1027 -
21820843-21820878,21820974-21821117,21821220-21821358,
21821522-21821652,21823615-21823670,21823964-21824258
Length = 266
Score = 35.5 bits (78), Expect = 0.039
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Frame = +3
Query: 225 KHIDEKNYKDAQECCKNLLRKDKQNYFGLVLLGKSFQDSDQACLA--YQKA--IACKPSH 392
K +DE + C + +L + F + LL + +DSDQ C A + A + KP H
Sbjct: 139 KEVDEGTARKVDSCARAILWLTRSMDFTIALLQRLEEDSDQKCFAQLVESAYMVTLKPWH 198
Query: 393 PLAWLGLASYYEAHDDQIMNVKLLP---VYVEILKLQIEEEKAL-EIISKIGKL 542
W+ A+Y A +KL+P +++ +L + ++ AL E I K+ KL
Sbjct: 199 --GWISSAAYKIA-------MKLIPDRKMFINLLVGKCQDCAALKEEIRKLAKL 243
>08_02_1146 +
24678142-24678258,24678550-24678587,24678997-24679012,
24679874-24680002,24680073-24680229,24680337-24680530,
24680668-24680916,24681196-24681309,24681949-24681990,
24682402-24682572,24682932-24683104,24683378-24683624,
24684046-24684130,24684401-24684510,24684714-24684977,
24685885-24685950,24686431-24686525,24686780-24686858
Length = 781
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +3
Query: 240 KNYKDAQECCKNLLRKDKQNYFGLVLLGKSFQDSDQ---ACLAYQKAIACKPSHPLAWLG 410
+ Y A K L+ Q+Y LG + +S Q A LAYQ+A+ KP++ AW
Sbjct: 657 REYDKAIAAFKTALQLKPQDYSLWNKLGATQANSIQSADAILAYQQALDLKPNYVRAWAN 716
Query: 411 LASYY 425
+ Y
Sbjct: 717 MGISY 721
>08_02_0077 - 11979497-11979654,11980012-11982178
Length = 774
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 285 KDKQNYF-GLVLLGKSFQDSDQACLAYQKAIACKPSHPLAWLGLASYYEAHDDQIMNV 455
K K ++F GL+ LG+ Q +QA L + A+ACK LGL ++ E + ++ M +
Sbjct: 558 KTKPDFFEGLIALGQ--QQFEQAKLCWYYALACKIDMGTEVLGLFNHAEDNMEKGMGM 613
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 186 KMADIKQLLKE-ARKHIDEKNYKDAQECCKNLLRKDKQNYFGLVLLGKSFQDSDQ 347
K ADI ++L A + + YK A C +L KDK N LV ++ S++
Sbjct: 405 KYADIVEVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNVSVLVQRALLYESSEK 459
>01_06_1788 -
39873900-39873986,39874009-39874137,39874180-39874246,
39874874-39874909,39875146-39875292,39875772-39875899,
39876349-39876435,39876523-39876633,39877433-39877600,
39877665-39877749,39877826-39877942,39878051-39878127,
39879981-39880077,39880175-39880377,39880519-39880645,
39880687-39880754,39880855-39880908,39880990-39881108,
39881651-39881729,39881803-39881865,39882113-39882232,
39882718-39882774,39882872-39882988,39883122-39883172,
39883262-39883360,39883438-39883583,39883740-39883887
Length = 928
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +3
Query: 210 LKEARKHIDEKNYKDAQECCKNLLRKDKQNYFGLVLLGKSF---QDSDQACLAYQKAIAC 380
L+ AR+ +YK A E C + R + + L+LLG + ++ D ++A+A
Sbjct: 56 LEIARQSYRAGDYKAALEHCNAVYRANPRLLENLLLLGAVYYQLREFDMCIAKNEEAVAI 115
Query: 381 KPSHPLAWLGLASYYEAHDD 440
+P+ P + +A+ + D
Sbjct: 116 QPNCPECFNSIANAWREKGD 135
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 318 LGKSFQDS---DQACLAYQKAIACKPSHPLAWLGLASYY 425
LG + +D+ ++A YQ +A +PSHP A L + Y
Sbjct: 333 LGNALKDAGRNEEAISCYQTCLALQPSHPQALTNLGNVY 371
>12_01_0715 - 6230393-6231559,6233234-6234553
Length = 828
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +3
Query: 459 LLPVYVEILKLQIEEEKALEIISKIGKLGVRYKNGDVVETLINYLKEEPPTTLRKSAEEQ 638
LLPVY+E L + + I K G + + Y N +N+ T L K++
Sbjct: 490 LLPVYIEFFDLSFNNIEGVIPIPKEGSVTLDYSNNRFSSLPLNFSTYLSNTVLFKASNNS 549
Query: 639 LICLINENIP 668
I+ NIP
Sbjct: 550 ----ISGNIP 555
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,741,186
Number of Sequences: 37544
Number of extensions: 250074
Number of successful extensions: 588
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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