Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5b23
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047655-12|AAD34650.2|  171|Caenorhabditis elegans Hypothetical...    35   0.060
AF002198-1|AAF99929.1|  201|Caenorhabditis elegans Hypothetical ...    33   0.18 
AC087079-1|AAK27872.1|  402|Caenorhabditis elegans Hypothetical ...    33   0.24 
AY081955-1|AAL92523.1|  788|Caenorhabditis elegans MAT-1 protein.      32   0.42 
AC006708-13|AAF60415.1|  788|Caenorhabditis elegans Metaphase-to...    32   0.42 
U58763-2|AAK68876.1|  673|Caenorhabditis elegans Metaphase-to-an...    31   0.56 
AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical ...    31   0.56 
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p...    29   2.3  
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos...    29   2.3  
Z70279-1|CAE46679.1|  309|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U10401-9|AAA19054.4|  771|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AF047655-12|AAD34650.2|  171|Caenorhabditis elegans Hypothetical
           protein C17B7.12 protein.
          Length = 171

 Score = 34.7 bits (76), Expect = 0.060
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 249 KDAQECCKNLLRKDKQNYFGLVLLGKSFQDSDQACL 356
           K  Q+C KNL R  K +  GL+L  K ++D  Q CL
Sbjct: 32  KLVQQCLKNLPRSYKLSNTGLILENKEYKDESQKCL 67


>AF002198-1|AAF99929.1|  201|Caenorhabditis elegans Hypothetical
           protein F35F10.5 protein.
          Length = 201

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 249 KDAQECCKNLLRKDKQNYFGLVLLGKSFQDSDQACL 356
           K  ++C KNL R  K +  GL+L  K ++D  Q CL
Sbjct: 31  KLVKQCLKNLPRSYKLSNTGLILENKEYKDESQKCL 66


>AC087079-1|AAK27872.1|  402|Caenorhabditis elegans Hypothetical
           protein Y37E3.1 protein.
          Length = 402

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +3

Query: 240 KNYKDAQECCKNLLRKDKQNYFGLVLLGKSFQDSDQACLAYQKAIACKPSHPL 398
           +NYK A EC   L R D Q Y  +    K  +  D+A    QKA+   P + L
Sbjct: 201 ENYKKALEC--ELSRTDPQVYINMATCLKFMEKYDEALAVLQKAVEYDPRNEL 251


>AY081955-1|AAL92523.1|  788|Caenorhabditis elegans MAT-1 protein.
          Length = 788

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query: 237 EKNYKDAQECCKNLLRKDKQNYFGLVLLGKSF--QDS-DQACLAYQKAIACKPSHPLAWL 407
           ++ +  A EC +  ++ DK+  +   LLG     QD  D+A  +++ A+   P    AW 
Sbjct: 574 QRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWY 633

Query: 408 GL 413
           GL
Sbjct: 634 GL 635


>AC006708-13|AAF60415.1|  788|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 1,
           isoform a protein.
          Length = 788

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query: 237 EKNYKDAQECCKNLLRKDKQNYFGLVLLGKSF--QDS-DQACLAYQKAIACKPSHPLAWL 407
           ++ +  A EC +  ++ DK+  +   LLG     QD  D+A  +++ A+   P    AW 
Sbjct: 574 QRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWY 633

Query: 408 GL 413
           GL
Sbjct: 634 GL 635


>U58763-2|AAK68876.1|  673|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 3
           protein.
          Length = 673

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
 Frame = +3

Query: 312 VLLGKSFQDSDQ---ACLAYQKAIACKPSHPLAWLGLASYYEAHDDQIMNVKLLPVYVEI 482
           VL+G  F +      AC++Y++AI   P+    W GL   Y   D   M    L  Y E 
Sbjct: 438 VLIGHEFMEMKNNAAACVSYRRAIEIDPADHRGWYGLGQMY---DIMKMPAYALFYYQEA 494

Query: 483 LKLQIEEEKAL----EIISKIGKL 542
            K +  + + L    +I SK+ ++
Sbjct: 495 QKCKPHDSRLLVALGDIYSKLNRI 518


>AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical
           protein Y47A7.1 protein.
          Length = 1114

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +3

Query: 189 MADIKQLLKEARKHIDEKNYKDAQECCKNLLRKDKQNYFGLVLLGKSFQ-DSDQACLAYQ 365
           M D+K  LK A   +     +   E             F  + L  S   D   +   Y+
Sbjct: 1   MGDLKDDLKSAASLLKSGENEKVIELLNKYTESSDYRVFCFIALAYSNNADFTNSYKMYR 60

Query: 366 KAIACKPSHPLAWLGLASYYE 428
           KA+    S+P+AW GL   +E
Sbjct: 61  KAVDIDESNPMAWKGLFKLFE 81


>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
            protein F20G4.3 protein.
          Length = 2003

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = +3

Query: 186  KMADIKQLLKEARKHIDEKNYKDAQECCKNLLRKDKQNYFGLVLLGKSFQDSDQACLAYQ 365
            ++ ++K LL EARK +DE+N +  +E  K   +K+K+          + Q  D+A  A +
Sbjct: 1375 EVKEVKSLLAEARKKLDEENREVMEELRK---KKEKELSAEKERADMAEQARDKAERAKK 1431

Query: 366  KAI 374
            KAI
Sbjct: 1432 KAI 1434


>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
            F20G4.3 protein.
          Length = 2003

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = +3

Query: 186  KMADIKQLLKEARKHIDEKNYKDAQECCKNLLRKDKQNYFGLVLLGKSFQDSDQACLAYQ 365
            ++ ++K LL EARK +DE+N +  +E  K   +K+K+          + Q  D+A  A +
Sbjct: 1375 EVKEVKSLLAEARKKLDEENREVMEELRK---KKEKELSAEKERADMAEQARDKAERAKK 1431

Query: 366  KAI 374
            KAI
Sbjct: 1432 KAI 1434


>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
            heavy chain II protein.
          Length = 2003

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = +3

Query: 186  KMADIKQLLKEARKHIDEKNYKDAQECCKNLLRKDKQNYFGLVLLGKSFQDSDQACLAYQ 365
            ++ ++K LL EARK +DE+N +  +E  K   +K+K+          + Q  D+A  A +
Sbjct: 1375 EVKEVKSLLAEARKKLDEENREVMEELRK---KKEKELSAEKERADMAEQARDKAERAKK 1431

Query: 366  KAI 374
            KAI
Sbjct: 1432 KAI 1434


>Z70279-1|CAE46679.1|  309|Caenorhabditis elegans Hypothetical
           protein K11E8.1m protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +3

Query: 486 KLQIEEEKAL--EIISKIGKLGVRYKNGDVVETLINYLKEEPPTTLRKSAE 632
           K Q++E+K    +++ K  KL V  +  D+   L+N  ++ PP+T+++S+E
Sbjct: 76  KDQVDEQKKKNEQVVKKPEKLEV--EADDLGRNLLNKKEQGPPSTIKESSE 124


>U10401-9|AAA19054.4|  771|Caenorhabditis elegans Hypothetical
           protein T20B12.1 protein.
          Length = 771

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +3

Query: 324 KSFQDSDQACLAYQKAIACKPSHPLAWLGLASYYEAHDDQIMNVKLLPVYVEILKLQIEE 503
           ++F++S Q    Y + ++ +P H  AW  L++ Y  H  +    KLL    E LK   E 
Sbjct: 499 ENFKESTQC---YHRCVSLQPDHFEAWNNLSAAYIRHGQKPKAWKLLQ---EALKYNYEH 552

Query: 504 EKALE 518
               E
Sbjct: 553 PNVWE 557


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,792,192
Number of Sequences: 27780
Number of extensions: 251580
Number of successful extensions: 764
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)