Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5b19
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...   144   1e-35
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    27   1.9  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    26   5.7  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   5.7  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   7.6  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    25   10.0 

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score =  144 bits (349), Expect = 1e-35
 Identities = 64/84 (76%), Positives = 73/84 (86%)
 Frame = +2

Query: 149 AVIKNADXSEEMQQDAVDCATQALEKFNIEXDIAAFXKKEFDKKYNPTWHCIVGRNFGSY 328
           AVIK  D SE+MQQ+A+  A QA+EKF IE DIAAF K+EFDKK++PTWHCIVGRNFGS+
Sbjct: 2   AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSF 61

Query: 329 VTHETRHFIYFYLGQVAILLFKSG 400
           VTHE+RHFIYFYLG VA LLFKSG
Sbjct: 62  VTHESRHFIYFYLGTVAFLLFKSG 85


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 499 PQPEPRMRICKGYPSDNTASAA-NKKIEVMLNGLTALKEQYSH 374
           PQ EP     + Y   N   A  N+++EV+ + L+ LKEQ +H
Sbjct: 307 PQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKEQITH 349


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 87  VKILITGDSMPTFQRILSQ 31
           VK+ +TG+SM TF  ILS+
Sbjct: 183 VKVTLTGESMYTFLSILSE 201


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 460 PSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASL 338
           P+DN A+     IE +L+G+T  KE+  H+ ++     ASL
Sbjct: 160 PNDNLAAQYQFWIERLLHGITE-KEELQHIYKILTLTPASL 199


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 132 LSWVCFCFDK*TNSHVKILITGDSMPTFQRILS 34
           ++WV  C DK   SH++ L+  +S+ T  +I+S
Sbjct: 443 VAWVEHCKDKSATSHIETLL--ESLETNSQIIS 473


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = +2

Query: 110 KQKQTQDKMCDRKAVIKNADXSEEMQQDAVDCATQALEKFNIEXDIAAFXKKEFDKKYNP 289
           +QKQ + +   RK   K    +E+ +    +   + L K N+E       +K+     N 
Sbjct: 527 QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVEVIGKGGERKKVASNSN- 585

Query: 290 TWHCIVGRN 316
            +H IV  N
Sbjct: 586 KYHPIVSSN 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,210
Number of Sequences: 5004
Number of extensions: 41984
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)