Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5b19
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660 80 1e-15
01_06_0783 + 31975261-31975398,31975583-31975726 80 2e-15
01_05_0324 - 20946774-20946935,20947301-20947780 78 7e-15
02_04_0361 - 22359278-22359439,22362291-22362728 73 3e-13
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749 70 2e-12
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842... 29 2.6
09_04_0584 - 18714461-18716296 29 3.4
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97... 29 4.5
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 28 7.8
>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
Length = 111
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/58 (60%), Positives = 42/58 (72%)
Frame = +2
Query: 146 KAVIKNADXSEEMQQDAVDCATQALEKFNIEXDIAAFXKKEFDKKYNPTWHCIVGRNF 319
K +K+AD EEM+Q+A D A A EK +E DIA + KKEFDK + PTWHCIVGRNF
Sbjct: 46 KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNF 103
>01_06_0783 + 31975261-31975398,31975583-31975726
Length = 93
Score = 79.8 bits (188), Expect = 2e-15
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Frame = +2
Query: 134 MCDRKAVIKNADXSEEMQQDAVDCATQALEKFNIEX--DIAAFXKKEFDKKYNPTWHCIV 307
M + KA++++ D +MQ A+ A +AL++F++ IAA KKEFD + P W C+V
Sbjct: 1 MLEGKAMVEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVV 60
Query: 308 GRNFGSYVTHETRHFIYFYLGQVAILLFK 394
G +FG Y TH FIYF LG + L+FK
Sbjct: 61 GASFGCYFTHSKGSFIYFKLGALRFLVFK 89
>01_05_0324 - 20946774-20946935,20947301-20947780
Length = 213
Score = 77.8 bits (183), Expect = 7e-15
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Frame = +2
Query: 164 ADXSEEMQQDAVDCATQA---LEKFNIEXDIAAFXKKEFDKKYNPTWHCIVGRNFGSYVT 334
AD S MQ A CA ++ L+KF+ +A KKEFDK Y PTWHCIVG ++GS+VT
Sbjct: 125 ADMSPFMQLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVYGPTWHCIVGTSYGSFVT 183
Query: 335 HETRHFIYFYLGQVAILLFKS 397
H F+YF + ++ ++LFK+
Sbjct: 184 HARGCFLYFSMDKIIVMLFKT 204
>02_04_0361 - 22359278-22359439,22362291-22362728
Length = 199
Score = 72.5 bits (170), Expect = 3e-13
Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Frame = +2
Query: 110 KQKQTQDKMCDRKAVIK--NADXSEEMQQDAVDCATQALEKF-NIEXD-IAAFXKKEFDK 277
K+K+ + +RK ++ AD MQ+ AV A A+ ++ +A KKEFD
Sbjct: 91 KEKEMEKGKEERKVSVRVRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDA 150
Query: 278 KYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 397
Y P WHCIVG FGSYVTH F+YF + +V +LLF++
Sbjct: 151 TYGPAWHCIVGTGFGSYVTHSVGGFLYFSVDKVYVLLFRT 190
>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
Length = 135
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/64 (50%), Positives = 41/64 (64%)
Frame = +2
Query: 134 MCDRKAVIKNADXSEEMQQDAVDCATQALEKFNIEXDIAAFXKKEFDKKYNPTWHCIVGR 313
+ K IK+A+ EEM+Q+A D A EK +E DI + K EFDK + PTWHCIVG
Sbjct: 54 LAGHKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYIK-EFDKNHGPTWHCIVGH 112
Query: 314 NFGS 325
NFG+
Sbjct: 113 NFGT 116
>05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,
8427110-8427205,8427530-8427616,8428639-8428767,
8428922-8429098,8429185-8429295,8429642-8429761,
8430767-8432427,8432485-8432867,8433707-8434470,
8434532-8434813,8436158-8436493
Length = 1523
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 134 SCLGFVFASINEQILTLRF**PEIRCLLSRGFFHRLLSTKLHS 6
SCL V + EQ + PE+RCL+ R L+S K+H+
Sbjct: 969 SCLDVVVLIVKEQDMETLARLPELRCLVLRLHETELVSIKIHT 1011
>09_04_0584 - 18714461-18716296
Length = 611
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +2
Query: 44 LWKVGIESPVIKILT*EF----VHLSKQKQTQDKMCDRKAVI 157
+WKVG+ + VIK ++ F H+ K K QDKM ++++I
Sbjct: 238 VWKVGVLTGVIKHMSPNFDKIRNHVRKSKCLQDKMTAKESLI 279
>06_01_0125 +
970746-970967,971126-971226,971897-972026,972108-972333,
972400-972502,972519-972594,972710-973333
Length = 493
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 113 QKQTQDKMCDRKAVIKNADXSEEMQQDAVDCATQALEK 226
Q + ++K C KA + + S + +QD +D Q EK
Sbjct: 259 QHRKRNKFCGHKAAVDRLNESGKNEQDRIDDVVQMYEK 296
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 92 EFVHLSKQKQTQDKMCDRKA-VIKNADXSEEMQQDAVDCATQALEKFNIEXDIAAFXKKE 268
EF L +++ + CD + +N EE Q +DC + E+F+ E D K
Sbjct: 567 EFERLLQEELARAIECDVDSETTENCKLREEQIQRIIDCQVKDAEEFDAEQD--ELIKTH 624
Query: 269 FDKKYN 286
+KK N
Sbjct: 625 EEKKAN 630
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,411,392
Number of Sequences: 37544
Number of extensions: 260602
Number of successful extensions: 670
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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