Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5b19
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light ch...   178   3e-45
AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical...    83   1e-16
Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical pr...    76   2e-14
AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical ...    64   7e-11
AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical ...    64   7e-11
AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical ...    29   4.0  
AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D prot...    29   4.0  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    28   7.0  

>U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light chain
           protein 1 protein.
          Length = 89

 Score =  178 bits (433), Expect = 3e-45
 Identities = 79/89 (88%), Positives = 85/89 (95%)
 Frame = +2

Query: 134 MCDRKAVIKNADXSEEMQQDAVDCATQALEKFNIEXDIAAFXKKEFDKKYNPTWHCIVGR 313
           M DRKAVIKNAD S++MQQDA+DCATQALEK+NIE DIAA+ KKEFDKKYNPTWHCIVGR
Sbjct: 1   MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 314 NFGSYVTHETRHFIYFYLGQVAILLFKSG 400
           NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89


>AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.43 protein.
          Length = 186

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 34/83 (40%), Positives = 55/83 (66%)
 Frame = +2

Query: 149 AVIKNADXSEEMQQDAVDCATQALEKFNIEXDIAAFXKKEFDKKYNPTWHCIVGRNFGSY 328
           A ++++     M+Q+A   A +++  +++E DIA   K  FD++Y P WHCI G++FGS+
Sbjct: 58  ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGKHFGSF 117

Query: 329 VTHETRHFIYFYLGQVAILLFKS 397
           VT E   FIYF +G +A +LFK+
Sbjct: 118 VTFEPDSFIYFRIGTIAFMLFKT 140


>Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical
           protein M18.2 protein.
          Length = 90

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 32/89 (35%), Positives = 51/89 (57%)
 Frame = +2

Query: 134 MCDRKAVIKNADXSEEMQQDAVDCATQALEKFNIEXDIAAFXKKEFDKKYNPTWHCIVGR 313
           M + K  +K  D  +  +   +    +A   +NI+ D+AAF K+E DKK+  TWH I G+
Sbjct: 1   MSEEKIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGK 60

Query: 314 NFGSYVTHETRHFIYFYLGQVAILLFKSG 400
            FGS V++E  HFI     +V ++++K G
Sbjct: 61  CFGSRVSYEMGHFILLKCNKVNVMIYKCG 89


>AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2b protein.
          Length = 129

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 28/81 (34%), Positives = 52/81 (64%)
 Frame = +2

Query: 152 VIKNADXSEEMQQDAVDCATQALEKFNIEXDIAAFXKKEFDKKYNPTWHCIVGRNFGSYV 331
           +I++ +   E  +++      AL+   IE +IA+F K++FD KY   W C+VGRNFGS++
Sbjct: 51  IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL 110

Query: 332 THETRHFIYFYLGQVAILLFK 394
             +   FI+F + +++++LF+
Sbjct: 111 --DPIQFIHFTVSKISVILFR 129


>AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2a protein.
          Length = 111

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 28/81 (34%), Positives = 52/81 (64%)
 Frame = +2

Query: 152 VIKNADXSEEMQQDAVDCATQALEKFNIEXDIAAFXKKEFDKKYNPTWHCIVGRNFGSYV 331
           +I++ +   E  +++      AL+   IE +IA+F K++FD KY   W C+VGRNFGS++
Sbjct: 33  IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL 92

Query: 332 THETRHFIYFYLGQVAILLFK 394
             +   FI+F + +++++LF+
Sbjct: 93  --DPIQFIHFTVSKISVILFR 111


>AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical
           protein Y38F1A.5 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 315 LRPTMQCQVGLYFLSN 268
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


>AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D
           protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 315 LRPTMQCQVGLYFLSN 268
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 463 YPSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIRAKI 314
           Y  D    + + KI  +L  LTA K  +   S V+V EV     HI+  I
Sbjct: 642 YHLDERDDSLDSKIGAILKKLTADKNAWPFASPVDVKEVPEYYDHIKHPI 691


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,583,972
Number of Sequences: 27780
Number of extensions: 243792
Number of successful extensions: 631
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)