Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5b18
(451 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P53803 Cluster: DNA-directed RNA polymerases I, II, and... 101 5e-21
UniRef50_Q9U3I0 Cluster: Putative uncharacterized protein; n=2; ... 87 1e-16
UniRef50_Q9FLM8 Cluster: Similarity to metallothionein-I gene tr... 72 5e-12
UniRef50_A7R4J8 Cluster: Chromosome undetermined scaffold_712, w... 68 1e-10
UniRef50_P48011 Cluster: DNA-directed RNA polymerases I, II, and... 66 3e-10
UniRef50_A4RGB8 Cluster: Predicted protein; n=4; Pezizomycotina|... 64 2e-09
UniRef50_Q01EI8 Cluster: Rpc10 RPC10 subunit of RNA polymerases ... 63 3e-09
UniRef50_Q0ULZ1 Cluster: Predicted protein; n=1; Phaeosphaeria n... 62 7e-09
UniRef50_Q8IDR2 Cluster: Transcription activator, putative; n=3;... 58 7e-08
UniRef50_P40422 Cluster: DNA-directed RNA polymerases I, II, and... 57 2e-07
UniRef50_A6RR89 Cluster: Predicted protein; n=2; Sclerotiniaceae... 56 4e-07
UniRef50_Q9C8M4 Cluster: RNA polymerase II, putative; 28841-2948... 54 1e-06
UniRef50_Q8L449 Cluster: Putative uncharacterized protein P0617C... 54 1e-06
UniRef50_Q4N0U1 Cluster: Transcription activator, putative; n=5;... 53 3e-06
UniRef50_Q4WQ88 Cluster: Metallothionein-I gene transcription ac... 52 6e-06
UniRef50_A0BKF6 Cluster: Chromosome undetermined scaffold_112, w... 50 3e-05
UniRef50_Q0UG25 Cluster: Predicted protein; n=1; Phaeosphaeria n... 50 3e-05
UniRef50_Q6CBC5 Cluster: Similar to sp|P40422 Saccharomyces cere... 49 4e-05
UniRef50_A2YHC2 Cluster: Putative uncharacterized protein; n=1; ... 49 5e-05
UniRef50_A2EWQ0 Cluster: DNA-directed RNA polymerasese, putative... 45 9e-04
UniRef50_Q9XG44 Cluster: DNA-directed RNA polymerases I, II and ... 44 0.002
UniRef50_Q3LW90 Cluster: DNA-directed RNA polymerases I, II and ... 44 0.002
UniRef50_Q8TYC4 Cluster: DNA-directed RNA polymerase subunit P; ... 36 0.54
UniRef50_Q9APY1 Cluster: Paraquat-inducible protein A; n=12; Pse... 33 3.8
UniRef50_Q7QYM7 Cluster: GLP_393_41939_41775; n=2; Giardia intes... 33 3.8
UniRef50_Q2HF65 Cluster: Predicted protein; n=1; Chaetomium glob... 33 3.8
UniRef50_Q975R9 Cluster: DNA-directed RNA polymerase subunit P; ... 33 3.8
UniRef50_A5GCI3 Cluster: Cytochrome C family protein precursor; ... 32 5.0
UniRef50_A7F757 Cluster: Putative uncharacterized protein; n=1; ... 32 5.0
UniRef50_UPI00015BB23A Cluster: RNA polymerase Rbp10; n=1; Ignic... 32 6.6
UniRef50_A2BIW9 Cluster: DNA-directed RNA polymerase, subunit P;... 32 6.6
>UniRef50_P53803 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC4; n=26; Eukaryota|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC4 - Homo
sapiens (Human)
Length = 58
Score = 101 bits (243), Expect = 5e-21
Identities = 45/57 (78%), Positives = 47/57 (82%)
Frame = +3
Query: 126 DTTGKEQSVTKVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 296
DT Q + PMIY+CGECH ENEIK RDPIRCRECGYRIMYKKRTKRLVVFDAR
Sbjct: 2 DTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>UniRef50_Q9U3I0 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 62
Score = 87.4 bits (207), Expect = 1e-16
Identities = 34/44 (77%), Positives = 41/44 (93%)
Frame = +3
Query: 165 MIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 296
MIY+CGECH ENEIKP+D IRCRECGYRI+YKKR ++L+V+DAR
Sbjct: 19 MIYICGECHAENEIKPKDAIRCRECGYRILYKKRCRKLMVYDAR 62
>UniRef50_Q9FLM8 Cluster: Similarity to metallothionein-I gene
transcription activator; n=5; Magnoliophyta|Rep:
Similarity to metallothionein-I gene transcription
activator - Arabidopsis thaliana (Mouse-ear cress)
Length = 51
Score = 72.1 bits (169), Expect = 5e-12
Identities = 28/45 (62%), Positives = 38/45 (84%)
Frame = +3
Query: 162 PMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 296
P+ YVCG+C +EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 7 PVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
>UniRef50_A7R4J8 Cluster: Chromosome undetermined scaffold_712,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_712, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 74
Score = 67.7 bits (158), Expect = 1e-10
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = +3
Query: 162 PMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKR 275
P+ Y+CG+C +EN +KP D I+CRECGYRI+YKKRT+R
Sbjct: 7 PVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRR 44
>UniRef50_P48011 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC4; n=1; Schizosaccharomyces pombe|Rep:
DNA-directed RNA polymerases I, II, and III subunit
RPABC4 - Schizosaccharomyces pombe (Fission yeast)
Length = 63
Score = 66.5 bits (155), Expect = 3e-10
Identities = 26/44 (59%), Positives = 35/44 (79%)
Frame = +3
Query: 165 MIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 296
MIY+C +C N I+ ++ IRCRECG+R+MYK RTKR+V F+AR
Sbjct: 20 MIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63
>UniRef50_A4RGB8 Cluster: Predicted protein; n=4;
Pezizomycotina|Rep: Predicted protein - Magnaporthe
grisea (Rice blast fungus) (Pyricularia grisea)
Length = 76
Score = 63.7 bits (148), Expect = 2e-09
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +3
Query: 162 PMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 296
P++Y CG+C + E+ RDPIRC ECG R++YK RT R++ F+AR
Sbjct: 32 PILYSCGDCGFKFEMNRRDPIRCTECGCRVLYKNRTNRMIEFEAR 76
>UniRef50_Q01EI8 Cluster: Rpc10 RPC10 subunit of RNA polymerases I,
II, and III, probable; n=2; Ostreococcus|Rep: Rpc10
RPC10 subunit of RNA polymerases I, II, and III,
probable - Ostreococcus tauri
Length = 56
Score = 62.9 bits (146), Expect = 3e-09
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = +3
Query: 171 YVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 296
Y CG+C E ++P D I CRECGYRI+YKKRTK++V F+AR
Sbjct: 15 YNCGDCGSEVLLRPGDVIICRECGYRILYKKRTKQVVQFEAR 56
>UniRef50_Q0ULZ1 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 67
Score = 61.7 bits (143), Expect = 7e-09
Identities = 27/58 (46%), Positives = 39/58 (67%)
Frame = +3
Query: 123 ADTTGKEQSVTKVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 296
AD T + S V Y CG+C ++ +K +PIRCR CG+R++YK+RT R+V F+AR
Sbjct: 12 ADPTAIDASARTVH--YKCGDCDQDVPLKRGEPIRCRNCGHRVLYKQRTNRMVQFEAR 67
>UniRef50_Q8IDR2 Cluster: Transcription activator, putative; n=3;
Plasmodium|Rep: Transcription activator, putative -
Plasmodium falciparum (isolate 3D7)
Length = 58
Score = 58.4 bits (135), Expect = 7e-08
Identities = 19/53 (35%), Positives = 38/53 (71%)
Frame = +3
Query: 138 KEQSVTKVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 296
+++ ++ P++Y+CGEC + I P +RC+ CG +I +KKR++R++ ++AR
Sbjct: 6 QDEDISTEPVVYICGECGIDTVIPPNASLRCKNCGSKIFFKKRSRRVMQYEAR 58
>UniRef50_P40422 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC4; n=11; Saccharomycetales|Rep:
DNA-directed RNA polymerases I, II, and III subunit
RPABC4 - Saccharomyces cerevisiae (Baker's yeast)
Length = 70
Score = 56.8 bits (131), Expect = 2e-07
Identities = 25/58 (43%), Positives = 36/58 (62%)
Frame = +3
Query: 123 ADTTGKEQSVTKVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 296
A G Q+ T + Y+C EC + + D +RC++CG+RI+ K RTKRLV F+AR
Sbjct: 14 AAAAGTSQARTAT-LKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR 70
>UniRef50_A6RR89 Cluster: Predicted protein; n=2;
Sclerotiniaceae|Rep: Predicted protein - Botryotinia
fuckeliana B05.10
Length = 106
Score = 56.0 bits (129), Expect = 4e-07
Identities = 20/36 (55%), Positives = 29/36 (80%)
Frame = +3
Query: 171 YVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRL 278
Y+CG+C+ +K DPIRC+ECG+R++YK+RT RL
Sbjct: 37 YLCGDCNASVMLKRGDPIRCKECGHRVLYKERTSRL 72
>UniRef50_Q9C8M4 Cluster: RNA polymerase II, putative; 28841-29486;
n=1; Arabidopsis thaliana|Rep: RNA polymerase II,
putative; 28841-29486 - Arabidopsis thaliana (Mouse-ear
cress)
Length = 61
Score = 54.0 bits (124), Expect = 1e-06
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = +3
Query: 165 MIYVCGECHKENEIKPRDPIRCRECGYRIMYKKR 266
+IYVCG+C +EN +K D +CR+CG+RI+YKKR
Sbjct: 17 VIYVCGDCGQENILKRGDVFQCRDCGFRILYKKR 50
>UniRef50_Q8L449 Cluster: Putative uncharacterized protein
P0617C02.110; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0617C02.110 - Oryza sativa subsp. japonica (Rice)
Length = 65
Score = 54.0 bits (124), Expect = 1e-06
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +3
Query: 162 PMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR*TN 305
P+ Y+C +C E +KP D ++C ECG RI+ KKRT++ +V D R T+
Sbjct: 18 PVSYLCTDCGTETLLKPTDVVQCHECGCRILCKKRTRQGIVVDHRATS 65
>UniRef50_Q4N0U1 Cluster: Transcription activator, putative; n=5;
Apicomplexa|Rep: Transcription activator, putative -
Theileria parva
Length = 58
Score = 52.8 bits (121), Expect = 3e-06
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +3
Query: 162 PMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKR 275
P+ Y+CGEC + ++P +RCR CG RI+YKKR+ R
Sbjct: 14 PITYICGECGHDVSLQPSSVVRCRNCGSRILYKKRSYR 51
>UniRef50_Q4WQ88 Cluster: Metallothionein-I gene transcription
activator; n=4; Trichocomaceae|Rep: Metallothionein-I
gene transcription activator - Aspergillus fumigatus
(Sartorya fumigata)
Length = 76
Score = 52.0 bits (119), Expect = 6e-06
Identities = 18/34 (52%), Positives = 27/34 (79%)
Frame = +3
Query: 171 YVCGECHKENEIKPRDPIRCRECGYRIMYKKRTK 272
Y+CGEC+ +K D IRC++CG+R++YK+RTK
Sbjct: 34 YLCGECNARVSLKRGDQIRCKDCGHRVLYKERTK 67
>UniRef50_A0BKF6 Cluster: Chromosome undetermined scaffold_112,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_112,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 54
Score = 49.6 bits (113), Expect = 3e-05
Identities = 17/34 (50%), Positives = 29/34 (85%)
Frame = +3
Query: 165 MIYVCGECHKENEIKPRDPIRCRECGYRIMYKKR 266
++Y+CG+C K+ +++ +D +RC +CGYRI+YKKR
Sbjct: 9 VVYICGKCGKDVQLEAKDIVRC-QCGYRILYKKR 41
>UniRef50_Q0UG25 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 290
Score = 49.6 bits (113), Expect = 3e-05
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +3
Query: 186 CHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 296
C IK +PIRC+ECG+R +YK+RT R+V F+AR
Sbjct: 254 CVDPVRIKQGEPIRCKECGFRSVYKRRTNRMVQFEAR 290
>UniRef50_Q6CBC5 Cluster: Similar to sp|P40422 Saccharomyces
cerevisiae DNA-directed RNA polymerases I; n=1; Yarrowia
lipolytica|Rep: Similar to sp|P40422 Saccharomyces
cerevisiae DNA-directed RNA polymerases I - Yarrowia
lipolytica (Candida lipolytica)
Length = 87
Score = 49.2 bits (112), Expect = 4e-05
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +3
Query: 171 YVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 296
Y+C C + + DP+RC+ECG+R++YK+R V F AR
Sbjct: 46 YLCANCSSKVVLIRGDPVRCKECGHRVLYKERANYTVQFSAR 87
>UniRef50_A2YHC2 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 97
Score = 48.8 bits (111), Expect = 5e-05
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +3
Query: 162 PMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKR 275
P+ Y+C +C E +KP D ++C ECG RI+ KKRT++
Sbjct: 18 PVSYLCTDCGTETLLKPTDVVQCHECGCRILCKKRTRQ 55
>UniRef50_A2EWQ0 Cluster: DNA-directed RNA polymerasese, putative;
n=1; Trichomonas vaginalis G3|Rep: DNA-directed RNA
polymerasese, putative - Trichomonas vaginalis G3
Length = 47
Score = 44.8 bits (101), Expect = 9e-04
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 171 YVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 296
Y C C K + R +RC +CG I+YKKRT + + F AR
Sbjct: 6 YNCSNCGKTVRAEDRGAMRCPQCGCNILYKKRTTKRITFSAR 47
>UniRef50_Q9XG44 Cluster: DNA-directed RNA polymerases I, II and
III; n=1; Guillardia theta|Rep: DNA-directed RNA
polymerases I, II and III - Guillardia theta
(Cryptomonas phi)
Length = 73
Score = 44.0 bits (99), Expect = 0.002
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +3
Query: 129 TTGKEQSVTKVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 296
TT ++ M Y+C EC I + C+ CG RI+YKKR+ +V + AR
Sbjct: 15 TTFASSNLAVCEMEYICSECGMLINISDLTSLTCKSCGCRILYKKRSDEVVEYIAR 70
>UniRef50_Q3LW90 Cluster: DNA-directed RNA polymerases I, II and
III; n=1; Bigelowiella natans|Rep: DNA-directed RNA
polymerases I, II and III - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 57
Score = 43.6 bits (98), Expect = 0.002
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +3
Query: 120 MADTTGKEQSVTKVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRL 278
M DT K + T + YVCG+C NEI +D I C C + I++KKR+ R+
Sbjct: 1 MKDTERKFKQKTYLE--YVCGKCGATNEISIKDNIICNICHFNILFKKRSIRV 51
>UniRef50_Q8TYC4 Cluster: DNA-directed RNA polymerase subunit P;
n=1; Methanopyrus kandleri|Rep: DNA-directed RNA
polymerase subunit P - Methanopyrus kandleri
Length = 51
Score = 35.5 bits (78), Expect = 0.54
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 171 YVCGECHKENEIK-PRDPIRCRECGYRIMYKKR 266
Y+C C K+ + DPIRC CG+R++ K R
Sbjct: 9 YICMRCGKKVRLDINEDPIRCTHCGFRLVMKPR 41
>UniRef50_Q9APY1 Cluster: Paraquat-inducible protein A; n=12;
Pseudomonadaceae|Rep: Paraquat-inducible protein A -
Pseudomonas aeruginosa
Length = 237
Score = 32.7 bits (71), Expect = 3.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 168 IYVCGECHKENEIKPRDPIRCRECGYRI 251
I VCGECH+ N + RC CG ++
Sbjct: 39 ILVCGECHQLNRADGNEHPRCSRCGAKL 66
>UniRef50_Q7QYM7 Cluster: GLP_393_41939_41775; n=2; Giardia
intestinalis|Rep: GLP_393_41939_41775 - Giardia lamblia
ATCC 50803
Length = 54
Score = 32.7 bits (71), Expect = 3.8
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 162 PMIYVCGECHKENEIKPRDPIRCR-ECGYRIMYKKRTKRLVVFDA 293
P++Y+C C E I C ++++YKKR R +V+ A
Sbjct: 9 PVVYICATCGCETNPHMDGTIHCNTNPNHKVLYKKRASRPLVYKA 53
>UniRef50_Q2HF65 Cluster: Predicted protein; n=1; Chaetomium
globosum|Rep: Predicted protein - Chaetomium globosum
(Soil fungus)
Length = 147
Score = 32.7 bits (71), Expect = 3.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 156 KVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDA 293
KVP Y+C C D +RC CG M+K R K++ + A
Sbjct: 103 KVP--YLCAACGVVTRFTANDMLRCVNCGGWTMHKPRVKQISQYPA 146
>UniRef50_Q975R9 Cluster: DNA-directed RNA polymerase subunit P;
n=5; Sulfolobaceae|Rep: DNA-directed RNA polymerase
subunit P - Sulfolobus tokodaii
Length = 48
Score = 32.7 bits (71), Expect = 3.8
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 171 YVCGECHKE---NEIKPRDPIRCRECGYRIMYKKRTKRLVVFDA 293
Y CG C +E +++ +RC CGY+I+Y R + V A
Sbjct: 4 YRCGNCWREFDDEQLRALPGVRCPYCGYKIIYMVRKPTVKVVKA 47
>UniRef50_A5GCI3 Cluster: Cytochrome C family protein precursor;
n=2; Geobacter|Rep: Cytochrome C family protein
precursor - Geobacter uraniumreducens Rf4
Length = 1053
Score = 32.3 bits (70), Expect = 5.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 135 GKEQSVTKVPMIYVCGECHKENEIKPRDPIR 227
GK S T V M YVC CH N P+R
Sbjct: 746 GKNSSSTSVVMNYVCTSCHDSNAAHINPPVR 776
>UniRef50_A7F757 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 764
Score = 32.3 bits (70), Expect = 5.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 138 KEQSVTKVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKR 266
KE+ V + +CG C +E +P D C CG R++ ++R
Sbjct: 689 KEEHVNEWAKRMICGWCSREGPYRPED---CAGCGERVISRRR 728
>UniRef50_UPI00015BB23A Cluster: RNA polymerase Rbp10; n=1;
Ignicoccus hospitalis KIN4/I|Rep: RNA polymerase Rbp10 -
Ignicoccus hospitalis KIN4/I
Length = 56
Score = 31.9 bits (69), Expect = 6.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 177 CGECHKENEIKP-RDPIRCRECGYRIMYKKRTKRLVVFDA 293
CG ++E++ +RC CGY+I+YK RT F A
Sbjct: 16 CGYVASKDELERLMMGVRCPRCGYKILYKIRTSGRTYFKA 55
>UniRef50_A2BIW9 Cluster: DNA-directed RNA polymerase, subunit P;
n=1; Hyperthermus butylicus DSM 5456|Rep: DNA-directed
RNA polymerase, subunit P - Hyperthermus butylicus
(strain DSM 5456 / JCM 9403)
Length = 67
Score = 31.9 bits (69), Expect = 6.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 171 YVCGECHKEN---EIKPRDPIRCRECGYRIMYKKR 266
Y CG C E +++ I+C CGYR++YK R
Sbjct: 23 YKCGRCGMEFSALDLEYMPTIKCPYCGYRVVYKVR 57
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,234,349
Number of Sequences: 1657284
Number of extensions: 6791600
Number of successful extensions: 14717
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 14320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14709
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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