Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5b17
(699 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 341 8e-93
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 311 1e-83
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 283 4e-75
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 249 4e-65
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 219 5e-56
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 208 1e-52
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 192 5e-48
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 192 9e-48
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 180 3e-44
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 180 4e-44
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 158 1e-37
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 145 1e-33
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 131 1e-29
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 123 4e-27
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 122 6e-27
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 120 3e-26
UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal ... 116 7e-25
UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2; Euryar... 95 1e-18
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 87 4e-16
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 86 9e-16
UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4; Pyroba... 84 4e-15
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 83 5e-15
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 83 5e-15
UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12; Archa... 78 2e-13
UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2; Halorubrum... 74 4e-12
UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4; Haloba... 71 2e-11
UniRef50_A1RXX5 Cluster: Ribosomal protein S3Ae; n=1; Thermofilu... 71 4e-11
UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6; Methan... 69 1e-10
UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1; Metallosph... 68 2e-10
UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960... 67 3e-10
UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n... 64 2e-09
UniRef50_A7IAJ1 Cluster: Ribosomal protein S3Ae; n=1; Candidatus... 64 4e-09
UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured... 63 6e-09
UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1; Methanocor... 62 1e-08
UniRef50_A3H9G4 Cluster: Ribosomal protein S3Ae; n=1; Caldivirga... 60 4e-08
UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiell... 60 5e-08
UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole geno... 59 9e-08
UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 58 3e-07
UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 54 4e-06
UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2; Thermoprot... 51 3e-05
UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S r... 42 0.019
UniRef50_Q74N14 Cluster: 30S ribosomal protein S3Ae; n=2; Nanoar... 37 0.41
UniRef50_Q4SVA9 Cluster: Chromosome undetermined SCAF13769, whol... 34 3.9
UniRef50_Q4P2U9 Cluster: Putative uncharacterized protein; n=1; ... 33 5.1
UniRef50_Q119K9 Cluster: Putative uncharacterized protein precur... 33 6.7
UniRef50_A0YI31 Cluster: DNA mismatch repair protein; n=5; Cyano... 33 6.7
UniRef50_Q0KDB8 Cluster: L-Amino-acid oxidase; n=3; cellular org... 33 8.9
UniRef50_Q22Y97 Cluster: TPR Domain containing protein; n=1; Tet... 33 8.9
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 341 bits (839), Expect = 8e-93
Identities = 159/206 (77%), Positives = 183/206 (88%)
Frame = +1
Query: 82 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 261
+VDPFTRKDWYDVKAP+MF RQVG TLVNRTQGTKIAS+GLKGRVFEVSLADLQ + DA
Sbjct: 21 VVDPFTRKDWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDA 80
Query: 262 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 441
ERSFRKF+L+AE V GR+VL NFHGM LTTDKLR MVKKWQTLIE ++DVKTTDG++LRV
Sbjct: 81 ERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLRV 140
Query: 442 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDI 621
FCIGFT KDS+SQRKTCYAQH+Q++ IR KM II R++T+++L+ VV KL+PDSIAKDI
Sbjct: 141 FCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDI 200
Query: 622 EKACHGIYPLRDVCIRKVKVLKRPRF 699
EKAC +YPL DV IRKVKVLK+PRF
Sbjct: 201 EKACQVVYPLHDVYIRKVKVLKKPRF 226
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 311 bits (764), Expect = 1e-83
Identities = 147/206 (71%), Positives = 174/206 (84%)
Frame = +1
Query: 82 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 261
+VDPF++KDWYDVKAP+MF+ R +G TLV RTQGTKIAS+GLKGRVFEVSLADLQ D
Sbjct: 21 VVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQND--- 77
Query: 262 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 441
E +FRKF+LI E VQG+N L NFHGMDLT DK+ MVKKWQT+IEA++DVKTTDGY+LR+
Sbjct: 78 EVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRL 137
Query: 442 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDI 621
FC+GFT K + RKT YAQH QVR IRKKM EI+TR+V ++L+EVVNKLIPDSI KDI
Sbjct: 138 FCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDI 197
Query: 622 EKACHGIYPLRDVCIRKVKVLKRPRF 699
EKAC IYPL DV +RKVK+LK+P+F
Sbjct: 198 EKACQSIYPLHDVFVRKVKMLKKPKF 223
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun sequence
- Vitis vinifera (Grape)
Length = 656
Score = 283 bits (693), Expect = 4e-75
Identities = 135/204 (66%), Positives = 164/204 (80%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 267
DPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFE+SLADLQAD D +
Sbjct: 417 DPFAKKDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADED--Q 474
Query: 268 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 447
++RK RL AE VQGRNVL NF GMD TTDKLR +V+KWQTLIEA++DVKTTD Y LR+FC
Sbjct: 475 AYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFC 534
Query: 448 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 627
I FT K +KTCYAQ +Q+R IR+KM EI+T T+ +L+E+V K IP+SI ++IEK
Sbjct: 535 IAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEK 594
Query: 628 ACHGIYPLRDVCIRKVKVLKRPRF 699
A IYPL++V IRKVK+LK P+F
Sbjct: 595 ATSSIYPLQNVYIRKVKILKAPKF 618
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 249 bits (610), Expect = 4e-65
Identities = 118/204 (57%), Positives = 155/204 (75%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 267
DPF RKDWY +KAP+ F+ R VG TLVNR+ G K A++ LKGR+FEVSLADLQ D D
Sbjct: 22 DPFARKDWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLADLQKDED--H 79
Query: 268 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 447
+FRK +L + VQG+N L NFHG+D T+DKLR +V+KWQ+LIEAN+ VKTTD Y+LR+F
Sbjct: 80 AFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFA 139
Query: 448 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 627
I T + +KT YA +Q+RAIR+KM EII R+ + L+++ NKLIP+ I ++IEK
Sbjct: 140 IAVTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEVIGREIEK 199
Query: 628 ACHGIYPLRDVCIRKVKVLKRPRF 699
A GIYPL++V IRKVK+LK+P+F
Sbjct: 200 ATQGIYPLQNVHIRKVKLLKQPKF 223
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 219 bits (535), Expect = 5e-56
Identities = 118/222 (53%), Positives = 156/222 (70%), Gaps = 18/222 (8%)
Frame = +1
Query: 85 VDPFTRKDWYDVKAPSMFSK----RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQAD 252
VDPFTRK+WY V+AP+ F K +VG T VNRTQGTK+AS+GLKGRV+EVSLAD++
Sbjct: 16 VDPFTRKEWYVVRAPTQFFKSPADNKVGFTPVNRTQGTKLASDGLKGRVYEVSLADMK-- 73
Query: 253 TDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYV 432
D + FRK +L AE V+GRNVL NF+GMDLT+DKLR ++ KW TLIE +DVKTTDGY
Sbjct: 74 DDESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSLIHKWSTLIECFVDVKTTDGYF 133
Query: 433 LRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLI----- 597
LRVF I FT K ++KT YA+ ++V+AIRKKM +I+T V++++L+ VV+ LI
Sbjct: 134 LRVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDYLIGVSLN 193
Query: 598 ---------PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 696
++A+ I I+P+ +V IRKVKVLK P+
Sbjct: 194 GVTTNASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLKTPK 235
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 208 bits (507), Expect = 1e-52
Identities = 99/207 (47%), Positives = 140/207 (67%), Gaps = 3/207 (1%)
Frame = +1
Query: 85 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 264
+DP +RK+WYD +AP FS + G TLV ++ G +IASE +KGRV E +LADL+ D +
Sbjct: 23 IDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLK-DNSND 81
Query: 265 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 444
+++RK +L+ + V GRN +F+G+D+T D+L M++KWQTLIEA +D KT DGY++RVF
Sbjct: 82 KAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVF 141
Query: 445 CIGFTNKDSL---SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 615
+ FT K S S TCYA+ +QVRAIR+K+ IT + + E LI + K
Sbjct: 142 TLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTK 201
Query: 616 DIEKACHGIYPLRDVCIRKVKVLKRPR 696
IEK I+PL+++ IRKVKVLKRP+
Sbjct: 202 KIEKETKNIFPLQNITIRKVKVLKRPK 228
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 192 bits (469), Expect = 5e-48
Identities = 84/204 (41%), Positives = 137/204 (67%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 267
+ RK+WYDV AP+ F KRQ T+ N+TQGT+IA++ L+GRVFE +LADL E
Sbjct: 23 ETMARKEWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEE 82
Query: 268 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 447
++RK R + VQGRN+L FH M++TTDK+ +++KW T +E ++VKT DGY +R+F
Sbjct: 83 AYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMANLLRKWCTTMETTVEVKTADGYTMRLFV 142
Query: 448 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 627
+ FT + Q + CYA+ V+ +R ++ ++I R ++ +++E V+ L + ++ + +
Sbjct: 143 VAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVR 202
Query: 628 ACHGIYPLRDVCIRKVKVLKRPRF 699
C+ I PLR++ IRKV+V++ P+F
Sbjct: 203 RCNPILPLRELRIRKVRVVRTPKF 226
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 192 bits (467), Expect = 9e-48
Identities = 87/204 (42%), Positives = 140/204 (68%)
Frame = +1
Query: 85 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 264
+DP RK+W+++ AP F+ G T +N++ GT +A+E +KGRV E SLADLQ +D +
Sbjct: 19 IDPLARKEWFELTAPVPFAAGGFGYTCINKSAGTVVATEAIKGRVVEASLADLQGQSD-Q 77
Query: 265 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 444
++RK +LI + V+G +F+G+D T DK+ M+KK QTLIE ++ ++ DGY+LR+F
Sbjct: 78 MAWRKVKLIIDDVEGTRCRTSFYGLDSTKDKIFGMIKKRQTLIETQVEARSQDGYILRIF 137
Query: 445 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 624
I FT QRKT YAQ +Q++ IRKK+ EI+ ++V+ + +++ +S+AK+I
Sbjct: 138 VIAFTKSIKNQQRKTTYAQRSQIKDIRKKIVEIVLKEVSKKSITQLLGFFNQESLAKEIG 197
Query: 625 KACHGIYPLRDVCIRKVKVLKRPR 696
KA I+PL+++ +RKVK++KRP+
Sbjct: 198 KATRTIFPLQNITLRKVKLVKRPK 221
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 180 bits (438), Expect = 3e-44
Identities = 99/200 (49%), Positives = 134/200 (67%), Gaps = 1/200 (0%)
Frame = +1
Query: 100 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 279
+KD YDVKA +MF+ R +G T V R Q TK+ S GL G VFE SLA LQ D RK
Sbjct: 12 KKDRYDVKALTMFNVRNIGKTQVLRKQETKMVSVGLNGLVFEASLASLQNDKVV---VRK 68
Query: 280 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 459
F+LI E ++G+N L N +GMDLT DK V KWQ ++EA+ DVKT D Y+L +FC+G+T
Sbjct: 69 FKLITEDMRGKNGLTNSYGMDLTWDKRCNKVIKWQ-MVEAHADVKTADYYLLCLFCVGYT 127
Query: 460 -NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACH 636
N + R+ AQ+ QV I +I+ D ++L+EV+NKL+PD++ KD+EKAC
Sbjct: 128 TNVTTRYARQLVCAQYQQVHQIWLITIQIM--DQRRTDLKEVLNKLVPDNVGKDVEKACQ 185
Query: 637 GIYPLRDVCIRKVKVLKRPR 696
IYPL DV +RKVK+L++P+
Sbjct: 186 FIYPLHDVFVRKVKILQKPK 205
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 180 bits (437), Expect = 4e-44
Identities = 88/180 (48%), Positives = 124/180 (68%)
Frame = +1
Query: 82 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 261
I +PF++K+WY+VK P F +R VG +VN+T GT+IASE LKGRV EV+LADL +
Sbjct: 22 IAEPFSKKEWYNVKVPKNFKRRTVGQIVVNKTAGTRIASEQLKGRVVEVNLADLMENEKF 81
Query: 262 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 441
KF+ E V G++ L FHG+ LTTDKLR +VKKW TLIE ++DVKTTDG+++R+
Sbjct: 82 GAYNYKFK--CEDVNGKDCLMIFHGLKLTTDKLRSIVKKWCTLIETSVDVKTTDGHLIRI 139
Query: 442 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDI 621
FCIGFT++ S +KT YA+ Q++ IRK M +IT++ + EL + V+ L + K +
Sbjct: 140 FCIGFTSRKSNQIKKTSYAKSAQIKKIRKIMNNLITKEAASRELTQFVDYLKKTNFQKKL 199
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 158 bits (384), Expect = 1e-37
Identities = 76/142 (53%), Positives = 98/142 (69%)
Frame = +1
Query: 271 FRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 450
FRKF+L E VQGR+ L NFHGMDLT DKL MV KWQ+ IEA++DVKTTDGY LR F I
Sbjct: 7 FRKFKLQVEDVQGRHCLTNFHGMDLTHDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVI 66
Query: 451 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKA 630
FT K Q+ YAQ T+++ +R ++ E++ R+V +L+ VV KLIPDSI +D
Sbjct: 67 AFTKKQE-DQKSHAYAQTTRIKKLRAEIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNE 125
Query: 631 CHGIYPLRDVCIRKVKVLKRPR 696
I+PL +RKVKVLK+P+
Sbjct: 126 ASSIFPLSGALVRKVKVLKKPK 147
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 145 bits (351), Expect = 1e-33
Identities = 74/203 (36%), Positives = 114/203 (56%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 267
DP+ +K+WY V AP+ F R +G T V +T G ++A++ + RV+EV+L DL +
Sbjct: 20 DPYLKKEWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGDLNPGAEDLN 79
Query: 268 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 447
KF L + V L NFHGMD+T K + +K I+ +D+ TTDGY+LRVF
Sbjct: 80 GNTKFYLQTQLVSDGKCLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFV 139
Query: 448 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 627
I FT++ +RK C+ + +R +R + E + ++ + +V KL + + +
Sbjct: 140 IAFTDRFRFQRRKNCHVKGRVIRMMRAGIYETLHNELGKVSIPVLVTKLSNFEVNAKLTE 199
Query: 628 ACHGIYPLRDVCIRKVKVLKRPR 696
A I RDV IR+VKV+KRPR
Sbjct: 200 ALQKITMCRDVMIRRVKVVKRPR 222
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 131 bits (317), Expect = 1e-29
Identities = 68/114 (59%), Positives = 85/114 (74%)
Frame = +1
Query: 82 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 261
+VDPF++KDWYDV AP+MF+ R +G TLV RTQGTKIAS+ GRVFEVSLADLQ D
Sbjct: 21 VVDPFSKKDWYDVNAPAMFNIRNIGKTLVTRTQGTKIASD---GRVFEVSLADLQND--- 74
Query: 262 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTD 423
E +FRKF+LI E VQG+N L NFHG+DLT+DK+ ++K I +V+T D
Sbjct: 75 EVAFRKFKLITEDVQGKNCLTNFHGVDLTSDKITSQIRKKMMEIMTR-EVQTND 127
Score = 95.1 bits (226), Expect = 1e-18
Identities = 42/60 (70%), Positives = 52/60 (86%)
Frame = +1
Query: 520 IRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRF 699
IRKKM EI+TR+V ++L+EVVNKLIPDSI KD+EKAC IYPL DV +RKVK+LK+P+F
Sbjct: 111 IRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDVEKACQSIYPLHDVFVRKVKMLKKPKF 170
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 123 bits (297), Expect = 4e-27
Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 1/203 (0%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSMFS-KRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 264
D F +K+W V P+ F+ KR +G T+ N+ ++ + + RV+E+S AD+ D
Sbjct: 18 DSFIKKEWRHVLVPAYFTGKRDIGVTVSNKCARGRVPMDYVNNRVWELSHADMVNDLSHA 77
Query: 265 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 444
+R IA G V F GM LT DKL +++K++T+I+A++D KT DG++LR+F
Sbjct: 78 YRLFSWRSIAA---GSEVYTQFAGMRLTHDKLDSIMRKYRTMIDASVDAKTADGFILRLF 134
Query: 445 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 624
IGFT K + S + YA + R +R M + +T + + ++ + + I +I
Sbjct: 135 TIGFTKKLANSHKNHTYANSHKARQVRDVMIKALTDACEANGVEQLCKDFVDEKIENEIV 194
Query: 625 KACHGIYPLRDVCIRKVKVLKRP 693
+ C I + V I KVKV+K P
Sbjct: 195 EKCKQICQIESVYITKVKVIKAP 217
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 122 bits (295), Expect = 6e-27
Identities = 60/159 (37%), Positives = 98/159 (61%)
Frame = +1
Query: 211 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 390
GR ++V+ ADL + D RKF ++G + F GM+LT+DK + M+KKW TL
Sbjct: 15 GRRYDVNQADLTGNNDV--GHRKFIFKIGDIKGSECVGFFDGMELTSDKHKAMIKKWHTL 72
Query: 391 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 570
IEA D+ DG V RVF +G T + +KTCY +H+ + IRK M ++I +++ +
Sbjct: 73 IEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTCYVKHSDEKKIRKIMFDVIEEELSGCD 132
Query: 571 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 687
+++++ KL +++ K IE+ I+PL++ C+RKVK +K
Sbjct: 133 VQKIMKKLANETVGKRIEELGSEIFPLQNCCVRKVKTIK 171
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 120 bits (290), Expect = 3e-26
Identities = 62/200 (31%), Positives = 111/200 (55%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 267
D +R++ V AP +F + +G TL+ + + + ++++VSLAD+ E
Sbjct: 19 DVNSRQELIKVYAPDIFDSKLIGKTLIKKRNPAD-ENSSVDNKIYQVSLADILGKE--EF 75
Query: 268 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 447
S F + + FHG+ LT DK+ ++KKW TLIE ++ KT DGY L++F
Sbjct: 76 SSINFNFKSLKIFNNECFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFLKLFL 135
Query: 448 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 627
I + K + KT Y +Q RA+R+++ +II ++ N ++++ ++++ I + IE
Sbjct: 136 IAQSKKPKNMKSKTVYINSSQKRALRRRITDIIIKEGINMDIKDFIHRIYSLKIYEKIEI 195
Query: 628 ACHGIYPLRDVCIRKVKVLK 687
C I+P+ V IRK+KV++
Sbjct: 196 NCSKIFPIHQVNIRKIKVVE 215
>UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal
protein S3a; n=1; Equus caballus|Rep: PREDICTED: similar
to ribosomal protein S3a - Equus caballus
Length = 153
Score = 116 bits (278), Expect = 7e-25
Identities = 57/90 (63%), Positives = 69/90 (76%)
Frame = +1
Query: 85 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 264
VD ++KDWYD+KAP+MF+ R +G TLV RTQGTKIAS+GLKG VFE+SLADLQ D E
Sbjct: 22 VDQISKKDWYDMKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGGVFEMSLADLQND---E 78
Query: 265 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTD 354
+FRKF+LI E VQG+ L NF M L+ D
Sbjct: 79 VAFRKFKLITEDVQGKRCLINFRSMGLSCD 108
>UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S3AE -
Uncultured methanogenic archaeon RC-I
Length = 225
Score = 95.5 bits (227), Expect = 1e-18
Identities = 66/203 (32%), Positives = 105/203 (51%)
Frame = +1
Query: 85 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 264
VD F K+WY V AP+ F++ +G TL + G I GRV E +L D+ D +
Sbjct: 9 VDAFRAKNWYQVIAPAEFNRANIGETLAD-DPGKMI------GRVMESTLGDVTGDWTKQ 61
Query: 265 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 444
FR+ E + G + +F G +LT D +R +VK+ + I+AN+ V T DG+ +RV
Sbjct: 62 NIKMIFRI--EEIGGNSAYTSFLGHELTRDYMRSLVKRRTSKIDANVVVTTKDGFKVRVK 119
Query: 445 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 624
I T K A+ +Q+ +IR+ M ++ + E +N+++ +A +I
Sbjct: 120 PIVLTVK---------RARTSQIESIRQIMINVVNKRGAELGFTEFINEVVTGKVASEIY 170
Query: 625 KACHGIYPLRDVCIRKVKVLKRP 693
K IYPLR V I K +++ RP
Sbjct: 171 KNTKNIYPLRRVEIGKSELVYRP 193
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 87.0 bits (206), Expect = 4e-16
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 4/206 (1%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 267
D + K WY + AP MF +VG T + E + GRV E +L D+ D
Sbjct: 4 DKWKDKVWYTILAPDMFDNVEVGETPADDP-------EKVIGRVLETTLGDVLDDITKHH 56
Query: 268 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 447
FR+ V+G F G L D +R +V++ + I+ IDV T DGY +RV
Sbjct: 57 IKVFFRIYD--VEGTTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAG 114
Query: 448 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLI----PDSIAK 615
+ FT T A+ +Q RAIRK+M ++I + + E + + + +SI +
Sbjct: 115 LAFT---------TRRAKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPE 165
Query: 616 DIEKACHGIYPLRDVCIRKVKVLKRP 693
I++A IYP+R IRK +VL+ P
Sbjct: 166 QIKEAGRKIYPIRQAEIRKTEVLEEP 191
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 85.8 bits (203), Expect = 9e-16
Identities = 62/203 (30%), Positives = 105/203 (51%)
Frame = +1
Query: 85 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 264
+D + K+WY+++AP+ ++ VGTT+ L GR E ++ +L D
Sbjct: 10 LDGWKSKEWYNIEAPAYLNRVIVGTTMAGDPSL-------LVGRNVETTVGELT--NDMT 60
Query: 265 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 444
++ K L V G + G +LTTD +R +VK+ + I+AN+DV+T DG+V+RV
Sbjct: 61 KNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQTSRIDANVDVRTKDGFVIRVK 120
Query: 445 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 624
FT K A+ +Q++AIR+ M +I+ + + ++ + + I ++ I
Sbjct: 121 PTCFTIK---------RARSSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIY 171
Query: 625 KACHGIYPLRDVCIRKVKVLKRP 693
+ IYPLR V IRK +V P
Sbjct: 172 RQAKFIYPLRRVEIRKTQVEAMP 194
>UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S3Ae -
Pyrobaculum aerophilum
Length = 221
Score = 83.8 bits (198), Expect = 4e-15
Identities = 61/202 (30%), Positives = 96/202 (47%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 267
DP+ K W+ V APS + N Q L R EVSL D+ D
Sbjct: 20 DPWALKKWFSVYAPSYLGGVFLAEVPANEAQK-------LLMRTLEVSLYDITKDISHLP 72
Query: 268 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 447
KF++ V+G L F G++LT D +R +V+K + + A +VKT DG V+R+
Sbjct: 73 IKLKFQI--HRVEGLKALTRFKGLELTRDYIRSLVRKGTSKVTAITEVKTKDGMVMRIAV 130
Query: 448 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 627
+G T + +K+ A+RKKM E + + + + + +++ ++A D+
Sbjct: 131 LGITTHRIGTAQKS---------AMRKKMIETLVKKAAELDSGQFLKEILEGTLAADLFI 181
Query: 628 ACHGIYPLRDVCIRKVKVLKRP 693
I P+R V I K+KVLK P
Sbjct: 182 VAKKIAPMRKVEIAKIKVLKYP 203
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 83.4 bits (197), Expect = 5e-15
Identities = 62/202 (30%), Positives = 97/202 (48%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 267
D + K WY + P FS +++G T + K+ GRV E +L DL +
Sbjct: 15 DKWRSKVWYTIITPETFSSKEIGMTPADDPD--KVI-----GRVAESTLYDLSGNFKKMH 67
Query: 268 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 447
F++ VQG N F G D+TTD +R M+++ ++ I+ +V+T+DGY +RV
Sbjct: 68 VKLYFKI--NRVQGTNAYTRFIGHDMTTDYIRRMIRRRRSRIDMIFNVETSDGYRMRVKV 125
Query: 448 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 627
+ ++ S KT IRKK+ E +T E V +I D +++ K
Sbjct: 126 LTVPDRRIKSSIKT---------EIRKKIQEYLTEKARAMTFSEYVKYIISDDAPRELSK 176
Query: 628 ACHGIYPLRDVCIRKVKVLKRP 693
IYP+R + IRK +VL P
Sbjct: 177 ELKVIYPVRRIEIRKSEVLHFP 198
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 83.4 bits (197), Expect = 5e-15
Identities = 59/204 (28%), Positives = 99/204 (48%)
Frame = +1
Query: 82 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 261
+ D +T K W+ + AP F ++G T + +K+ GR E +LA+L D
Sbjct: 10 VKDKWTLKKWFTLIAPEYFGMAELGETPAD--DASKVV-----GRTVETTLAELTNDYSN 62
Query: 262 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 441
+ +++K V G N F +LT + L + ++ + IE +DV T DGY LRV
Sbjct: 63 QNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRV 122
Query: 442 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDI 621
+ FT + + KT +Q RAIR M +I+ ++ + + + + + +I
Sbjct: 123 KSVVFT----VRRCKT-----SQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEI 173
Query: 622 EKACHGIYPLRDVCIRKVKVLKRP 693
K IYP+R V IRK+++L P
Sbjct: 174 YKNAKKIYPIRRVEIRKIELLAEP 197
>UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12;
Archaea|Rep: 30S ribosomal protein S3Ae - Aeropyrum
pernix
Length = 214
Score = 77.8 bits (183), Expect = 2e-13
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 4/208 (1%)
Frame = +1
Query: 82 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 261
I D + K W+ V AP +F + +GTT + + L GRV E +L D+ D
Sbjct: 6 IRDTWRLKKWFKVVAPPLFGETVLGTTPADDP-------DKLIGRVMETTLFDITGDYSY 58
Query: 262 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 441
F+++ V+G F G +L D +R + ++ + + +V T DGY LRV
Sbjct: 59 VHVKMYFQVVR--VEGDTAYTRFKGHELLRDYIRGLTRRKSSKVTGIFNVWTKDGYGLRV 116
Query: 442 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLI----PDSI 609
+ FT R+ C + +Q AIRK M EI+ + S L E++ ++ S+
Sbjct: 117 TAMAFT-------RQRC--KTSQKSAIRKVMQEIVEQKARESTLDELIQLMVFSDHEGSL 167
Query: 610 AKDIEKACHGIYPLRDVCIRKVKVLKRP 693
A I+++ IYPLR V I K K+L P
Sbjct: 168 AYLIDESARKIYPLRKVEIAKSKLLWVP 195
>UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2;
Halorubrum|Rep: Ribosomal protein S3Ae - Halorubrum
lacusprofundi ATCC 49239
Length = 215
Score = 73.7 bits (173), Expect = 4e-12
Identities = 55/198 (27%), Positives = 92/198 (46%)
Frame = +1
Query: 100 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 279
+K WY V AP F ++++G TL + + GR +L +L D+ A +
Sbjct: 12 QKRWYSVLAPEQFDRQELGETLAEEP-------DQVVGRTITTTLGELTGDSGANNTKLT 64
Query: 280 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 459
F++ V F +LT D LR +V++ + +EA+I V TTD Y +RV + T
Sbjct: 65 FKITD--VGSDTAYTEFIKYELTRDYLRSLVRRGASKVEASITVLTTDDYRIRVQPVALT 122
Query: 460 NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHG 639
K A +Q +AIR+ M + + + V+ ++ +++ I
Sbjct: 123 TKK---------ADRSQEKAIRRVMIDKVHAAAEDRTFESFVDAIVEGNLSSAIYGDAKL 173
Query: 640 IYPLRDVCIRKVKVLKRP 693
IYPLR V I+K+ + RP
Sbjct: 174 IYPLRRVEIQKLTLEARP 191
>UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4;
Halobacteriaceae|Rep: 30S ribosomal protein S3Ae -
Haloarcula marismortui (Halobacterium marismortui)
Length = 213
Score = 71.3 bits (167), Expect = 2e-11
Identities = 51/198 (25%), Positives = 90/198 (45%)
Frame = +1
Query: 100 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 279
+K WY V+AP F + +G T + + GR E +L +L D +
Sbjct: 12 QKRWYTVQAPEQFDREVLGKTPAEEP-------DKVLGRTIETTLGELTNDASENNTKLT 64
Query: 280 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 459
F++ V + F +LT D LR +V++ + +EA I V TTD Y +++ + T
Sbjct: 65 FKI--NEVASDSAYTEFIRHELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVT 122
Query: 460 NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHG 639
K A +Q +AIR+ M +++ + ++++ ++ ++ I
Sbjct: 123 TKK---------ADASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKD 173
Query: 640 IYPLRDVCIRKVKVLKRP 693
IYPLR V I+K + RP
Sbjct: 174 IYPLRRVEIKKTTLEARP 191
>UniRef50_A1RXX5 Cluster: Ribosomal protein S3Ae; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein S3Ae - Thermofilum
pendens (strain Hrk 5)
Length = 207
Score = 70.5 bits (165), Expect = 4e-11
Identities = 54/199 (27%), Positives = 97/199 (48%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 267
D ++ K W V AP F +G L+ + K GR EVS D+ D
Sbjct: 9 DKWSMKKWIKVLAPKAFGFANLG--LIPADEPEKAL-----GRTVEVSFYDITKDVSQLH 61
Query: 268 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 447
KF+++ V L M++T D +R +V++ + ++A +DV+T DG +RV
Sbjct: 62 IKLKFQIVK--VDDGIALTQLKLMEMTRDYIRSLVRRGTSRVDAILDVQTKDGVKMRVMA 119
Query: 448 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 627
+ T +S+ KT +Q +AIR+ M +II+ + + + + + ++A +++
Sbjct: 120 LAVT----VSRIKT-----SQKKAIRRIMFDIISEKAASLDFDTFIQQAVIGTMATEMQM 170
Query: 628 ACHGIYPLRDVCIRKVKVL 684
IYP++ V + K+KVL
Sbjct: 171 QAKKIYPIKKVEVYKIKVL 189
>UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6;
Methanococcales|Rep: 30S ribosomal protein S3Ae -
Methanococcus maripaludis
Length = 225
Score = 68.9 bits (161), Expect = 1e-10
Identities = 54/200 (27%), Positives = 90/200 (45%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 267
D + K WYD+ P F +G T N L GR+ E+SL DL +
Sbjct: 17 DTWKSKVWYDIYTPQSFGGDVIGQTPANDPAN-------LIGRISEISLRDLTNEHSKHM 69
Query: 268 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 447
+ F++ + V G N F G D T + L+ V++ ++ I A ++V+T DG+ +RV
Sbjct: 70 TRMYFKV--DGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVEVRTKDGFKVRVKA 127
Query: 448 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 627
+ T + KT IR +M +II + E V+ ++ + I
Sbjct: 128 LVLTAVRARDHHKT---------EIRVRMEQIIKEMAKETPFAEFVHAMLMGGLGSKIYG 178
Query: 628 ACHGIYPLRDVCIRKVKVLK 687
C ++PL+ V I K +V++
Sbjct: 179 DCKKMFPLKRVEIFKSEVIE 198
>UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S3Ae - Metallosphaera sedula DSM 5348
Length = 216
Score = 68.1 bits (159), Expect = 2e-10
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 1/203 (0%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 267
D + K W+ + +P +F + +G+T T GR E +L DL D
Sbjct: 16 DKWKMKKWFSIYSPKVFGEVSLGSTPAFDVSQTM-------GRKVETTLYDLTGDFSTVY 68
Query: 268 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 447
F+++ +G + F G +L+ D +R +V++ + I +D+ T DG+ LRV
Sbjct: 69 VHLYFKVVRN--EGERLFTEFAGHELSRDYVRSLVRRKSSKINKVVDITTKDGFTLRVKT 126
Query: 448 IGFTNKDSLSQRKTCYAQH-TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 624
+ T Y H Q IRK M +++ + E V ++I ++A +I
Sbjct: 127 LAL----------TAYRVHREQATTIRKIMEDVVKKTAEGKTFDEFVQEMIFGNLANNIF 176
Query: 625 KACHGIYPLRDVCIRKVKVLKRP 693
I PLR I K KVL P
Sbjct: 177 NEAKKIAPLRKAEIEKSKVLFAP 199
>UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960;
n=40; Coelomata|Rep: Uncharacterized protein
ENSP00000341960 - Homo sapiens (Human)
Length = 79
Score = 67.3 bits (157), Expect = 3e-10
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = +1
Query: 586 NKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRF 699
NKLIPDSI KDIEKAC IYPL DV +RKVK+LK+P+F
Sbjct: 1 NKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKF 38
>UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n=2;
Methanobacteriaceae|Rep: Small subunit ribosomal protein
S3Ae - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 193
Score = 64.5 bits (150), Expect = 2e-09
Identities = 50/199 (25%), Positives = 90/199 (45%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 267
D + K WY +K P F +++G T + L GR EV++ +L D +
Sbjct: 12 DTWKEKSWYTIKTPVNFEDKEIGETPARDP-------DYLIGRGVEVTMRELSGDFS--K 62
Query: 268 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 447
+ K R + V G F G TTD +R M+++ + I+A+ VKT D +++
Sbjct: 63 QYIKLRFEIDNVAGDVANTKFTGHKTTTDYVRSMIRRGTSRIDASSVVKTKDDRKVKLHV 122
Query: 448 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 627
+ T T A+ +Q + +R+ + +++ E++ ++ +A ++
Sbjct: 123 LAVT---------TRRAKSSQQKYMRQVINDLLAETAAEKSFDELIKLVVNGKLASEVYH 173
Query: 628 ACHGIYPLRDVCIRKVKVL 684
IYPL+ V I K KVL
Sbjct: 174 NAKKIYPLKRVEIIKSKVL 192
>UniRef50_A7IAJ1 Cluster: Ribosomal protein S3Ae; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S3Ae -
Methanoregula boonei (strain 6A8)
Length = 201
Score = 63.7 bits (148), Expect = 4e-09
Identities = 53/199 (26%), Positives = 89/199 (44%)
Frame = +1
Query: 85 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 264
V+ + K W+ V P K +G T+ + E +KGR+ + +L ++ D +
Sbjct: 11 VEGWKAKSWFKVYTPDNLGKAYIGDTIASEV-------ETVKGRIMQATLGEITNDYAKQ 63
Query: 265 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 444
F+ IAE V G F G ++T D LR +VK+ + I+ ++ V T D +R+
Sbjct: 64 HIKMSFK-IAE-VTGDAAYTEFVGHEVTRDYLRSLVKRRSSRIDCHVQVVTKDNKKVRL- 120
Query: 445 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 624
++S A Q A+R + + +L +VN ++ I+KD+
Sbjct: 121 --------TISCYTFARANIAQEHALRNAITAGLVAQAQAWDLNTLVNGVVSGEISKDLF 172
Query: 625 KACHGIYPLRDVCIRKVKV 681
K +YP R V I K KV
Sbjct: 173 KLVKTLYPTRRVEIIKSKV 191
>UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured
marine bacterium HF10_29C11|Rep: Ribosomal protein S3AE
- uncultured marine bacterium HF10_29C11
Length = 322
Score = 63.3 bits (147), Expect = 6e-09
Identities = 50/201 (24%), Positives = 98/201 (48%), Gaps = 1/201 (0%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSM-FSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 264
D + K WY ++AP ++ + +G T+ + E + GR++E++ + D
Sbjct: 21 DKWKTKRWYTIRAPRHPWNYQNIGETIGE-------SDEHIIGRIYEMTQQEFNGDFTKM 73
Query: 265 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 444
+FR ++E V G++ L F G T+ +R +++++ I+ IDV T DGY++R+
Sbjct: 74 HVMLRFR-VSETV-GQDALTTFVGHHHQTNHIRRQIRRYRGKIDDVIDVVTEDGYLVRIK 131
Query: 445 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 624
+ T K Q + ++IR K +++ V + + ++ S+ +I+
Sbjct: 132 PLIITQK---------RVQTSVKQSIRAKTRDVLLGYVAKTTYDALQVAMLDGSLETEIQ 182
Query: 625 KACHGIYPLRDVCIRKVKVLK 687
IYP R V IRK ++L+
Sbjct: 183 NQIKTIYPCRSVVIRKSQLLQ 203
>UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S3Ae - Methanocorpusculum labreanum (strain ATCC 43576 /
DSM 4855 / Z)
Length = 206
Score = 62.5 bits (145), Expect = 1e-08
Identities = 49/197 (24%), Positives = 91/197 (46%), Gaps = 1/197 (0%)
Frame = +1
Query: 85 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 264
V+ + K+WY V AP K+ +G + + E + GRV VSL +L D +
Sbjct: 12 VEGWKAKNWYKVHAPEFLGKQFIGEIISSNP-------ENVPGRVLTVSLGELIQDYSKQ 64
Query: 265 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDG-YVLRV 441
F+++ V G F+G ++T + +R MVKK + +++ I V L+V
Sbjct: 65 NVRASFKIMN--VAGDAAYTQFNGHEMTKEFVRAMVKKRASRVDSTITVTPLGSTRELQV 122
Query: 442 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDI 621
FT +A+ +QV+ +R KM +++ ++ V+ ++ ++K +
Sbjct: 123 TITAFTIN---------HARLSQVQELRAKMVKVVEDSAKEADFESFVSAMLKGELSKKM 173
Query: 622 EKACHGIYPLRDVCIRK 672
C I+P+R + I K
Sbjct: 174 FAECKPIFPVRRIEIIK 190
>UniRef50_A3H9G4 Cluster: Ribosomal protein S3Ae; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3Ae -
Caldivirga maquilingensis IC-167
Length = 221
Score = 60.5 bits (140), Expect = 4e-08
Identities = 50/162 (30%), Positives = 72/162 (44%)
Frame = +1
Query: 211 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 390
GR E +L DL D +FR+ V L F+GM+LT D +R +V++ +
Sbjct: 50 GRNVETTLYDLTKDLSHINVKLRFRVNG--VDDGRALTQFNGMELTRDYVRNLVRRGSSK 107
Query: 391 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 570
+ DV T DG LR+ + T T T IRK + + + + S+
Sbjct: 108 VMVIKDVTTKDGGKLRMEVLAIT---------TYRCTRTHKHLIRKSIMDRLDKVGQESD 158
Query: 571 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 696
+V I I D+ IYPLR V I K+KVL+ PR
Sbjct: 159 FDSLVRDSIMGKIQVDLFNVAKKIYPLRKVEIIKIKVLEYPR 200
>UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 215
Score = 60.1 bits (139), Expect = 5e-08
Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 1/193 (0%)
Frame = +1
Query: 103 KDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKF 282
K+W V AP +F + +G + N+ + + R EVSL++L D S+ K
Sbjct: 25 KEWKIVIAPKIFEYKIIGYIINNKYTNNSGRLKEISKRNLEVSLSELINDYS---SYYKI 81
Query: 283 RLIAEYVQGRNVL-CNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 459
+ Y + + F+G L+ D + MV K L+E +I + T V+ +F + +T
Sbjct: 82 IKLQPYTMNKMFIRTTFNGFRLSYDFIFSMVLKPTKLVEFSIKINTLKKKVVEIFVL-YT 140
Query: 460 NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHG 639
+L Y + +++R I ++ I + + N + + D I I++
Sbjct: 141 ITKNLHSNSITYGKRSRIRKINRESILCIKKMLENKPIDFIYKICCSDVIGNSIKRRSKR 200
Query: 640 IYPLRDVCIRKVK 678
+ P+++ I ++K
Sbjct: 201 VIPIKNFIISRIK 213
>UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_72, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 168
Score = 59.3 bits (137), Expect = 9e-08
Identities = 35/98 (35%), Positives = 56/98 (57%)
Frame = -1
Query: 309 SLHIFGD*SEFAERPFRVSVSL*ISQGNFENSSLQSFRSNFRSLGTVDKRGADLPLAEHR 130
SLH+ G S+ + + L ISQGN ++S L+ FR + S + +K A++ AE R
Sbjct: 61 SLHVLGSQSDLPVG--MILIVLNISQGNLKHSVLEPFRGDLGSQSSANKGFANISDAEDR 118
Query: 129 RSLDIVPIFASEWVDNLLLNTFFTALRQAFIFPDRHVQ 16
R L+++P+ S+ V LLL++ F L +FPD H +
Sbjct: 119 RRLNVIPVLLSKRVGCLLLSSLF-PLGNPLVFPDDHCE 155
>UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasmatales|Rep: 30S ribosomal protein S3Ae -
Picrophilus torridus
Length = 209
Score = 57.6 bits (133), Expect = 3e-07
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 1/202 (0%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK-GRVFEVSLADLQADTDAE 264
D + K WY + APS +R++ + A L GR EV ++D +
Sbjct: 11 DKWKEKTWYTIVAPSFLGEREIALS--------PAADPSLMIGRKVEVPVSDFTGNFRKS 62
Query: 265 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 444
+ FR+ + G+ F G ++ D +R MV++ + I+ + KT DGY L V
Sbjct: 63 STMVIFRV--KECTGKRCTTEFIGHKVSDDTIRRMVRRRKERIDIIMPSKTKDGYRL-VI 119
Query: 445 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 624
I + L+ K +R K+ I + L E+ +I D++ DI
Sbjct: 120 KIVLVSDSKLTANKR--------GEVRSKIIGFINERCGSMTLPELAQYIIGDNVYNDIV 171
Query: 625 KACHGIYPLRDVCIRKVKVLKR 690
+YP++ + IRK +VL R
Sbjct: 172 DTLKDVYPIKKIEIRKSEVLGR 193
>UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasma|Rep: 30S ribosomal protein S3Ae -
Thermoplasma volcanium
Length = 215
Score = 53.6 bits (123), Expect = 4e-06
Identities = 49/199 (24%), Positives = 85/199 (42%)
Frame = +1
Query: 88 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 267
+ + K WY V+AP ++V L S + RV EV +++L +
Sbjct: 12 EKWKEKVWYTVEAPPYLGSKEVSVALGED-------SNSMVNRVVEVPISELTGNFKKSN 64
Query: 268 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 447
FR+ +G F G + D +R +V++ + I+ DVKT+D ++ V
Sbjct: 65 EKALFRITN--CEGTKCKTIFIGHYIGDDYIRRLVRRRKERIDIIEDVKTSDNSIITVKI 122
Query: 448 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 627
+ T+ + +K IRK + + I + E V LI D I D+
Sbjct: 123 VVVTDGKVTNTKKF---------QIRKVLTDFILNKGLSLPYSEFVRYLIGDDIYNDMIS 173
Query: 628 ACHGIYPLRDVCIRKVKVL 684
A IYPL+ + +RK +++
Sbjct: 174 ATKDIYPLKKIEVRKSELV 192
>UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2;
Thermoprotei|Rep: Ribosomal protein S3AE - Cenarchaeum
symbiosum
Length = 203
Score = 50.8 bits (116), Expect = 3e-05
Identities = 46/202 (22%), Positives = 88/202 (43%)
Frame = +1
Query: 82 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 261
+ D + K W + AP F+ V V T + KGRV EV+L D+
Sbjct: 8 VKDKWRDKRWITIHAPDSFNS--VPAARVPITD-----DKHAKGRVIEVTLFDILKGDPQ 60
Query: 262 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 441
+ +++ + I + V + F + + + LR +V++ + + +DVKT+DGYV R+
Sbjct: 61 QNNYKIYFQI-DKVSEESATSIFKRYEYSKEYLRSLVRRGSSKVNYIVDVKTSDGYVFRL 119
Query: 442 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDI 621
+ T + + +K A+R + ++I V + + V I DI
Sbjct: 120 KVLALTYRHLNTSKK---------HALRLIIRDVIENTVPQMNIDQFVQAACYGKINSDI 170
Query: 622 EKACHGIYPLRDVCIRKVKVLK 687
+ +R + + KVK+++
Sbjct: 171 LSRAKKLVKVRHMGLEKVKLVR 192
>UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1; n=2; Eutheria|Rep: Similar to ribosomal
protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 - Homo sapiens (Human)
Length = 119
Score = 41.5 bits (93), Expect = 0.019
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 82 IVDPFTRKDWYDVKAPSMFSKRQVGTT 162
++D F++KDWYDVKA +MF+ R +G T
Sbjct: 21 VIDQFSKKDWYDVKALAMFNIRNIGKT 47
>UniRef50_Q74N14 Cluster: 30S ribosomal protein S3Ae; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3Ae -
Nanoarchaeum equitans
Length = 198
Score = 37.1 bits (82), Expect = 0.41
Identities = 44/192 (22%), Positives = 86/192 (44%), Gaps = 1/192 (0%)
Frame = +1
Query: 100 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 279
RK W+ +KAP++F++ ++G T + E + GR E+++A + + +
Sbjct: 12 RKIWFTIKAPAIFNEVELGETPAYK-------PEQVIGRRVELNMALVTNNYQLQNYKGI 64
Query: 280 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 459
F++ V+G G+ + ++ V+ + I + +K D ++RV + T
Sbjct: 65 FKITK--VEGTTAKTELEGIKMYESIIQKWVEPGRDKITDSFVIKDKDNRLVRVKPVLIT 122
Query: 460 NKDSLSQRKTCYAQHTQVRAI-RKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACH 636
N R+ Q T +R I R E+ + + +++NK IP+ + I+K
Sbjct: 123 N------RRLHRKQGTAIRNIWRNYFVELGKKLSFEDMVMKILNKEIPEQLKIQIKK--- 173
Query: 637 GIYPLRDVCIRK 672
IYP IR+
Sbjct: 174 -IYPPLFFAIRQ 184
>UniRef50_Q4SVA9 Cluster: Chromosome undetermined SCAF13769, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF13769, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 556
Score = 33.9 bits (74), Expect = 3.9
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = -2
Query: 407 SMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSAC 243
S+L S+ +C L++ +SLS+ S+ + +LRPC ++ ++L LS VS C
Sbjct: 389 SVLVSLSLCLSLSVLVSLSLSSSLSLSVPVSLRPCLSLSVLVSL--SLSVPVSLC 441
>UniRef50_Q4P2U9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 3702
Score = 33.5 bits (73), Expect = 5.1
Identities = 27/106 (25%), Positives = 52/106 (49%)
Frame = +1
Query: 304 QGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQR 483
Q ++ CN G+D+ D+++ V + +ID D VF G D+L R
Sbjct: 517 QAFDLFCNARGLDVLVDRIKAEVNR-------DIDDGAADRMSDSVF--GEPGPDNLYGR 567
Query: 484 KTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDI 621
+ + + + +R++ K + +++ T LR +VN +PDS+ + I
Sbjct: 568 LS-FGRASLLRSMFKTITQMMASTGTGDGLRNLVNTSLPDSLKRII 612
>UniRef50_Q119K9 Cluster: Putative uncharacterized protein precursor;
n=1; Trichodesmium erythraeum IMS101|Rep: Putative
uncharacterized protein precursor - Trichodesmium
erythraeum (strain IMS101)
Length = 2322
Score = 33.1 bits (72), Expect = 6.7
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -1
Query: 558 DVACNDFTHFLSDCSDLSVLGVARLALAQGVLIGET 451
+V NDF LSD ++S LG+A +A G+LI T
Sbjct: 2048 EVGLNDFQLMLSDRLEMSFLGIANFQVAGGLLINGT 2083
>UniRef50_A0YI31 Cluster: DNA mismatch repair protein; n=5;
Cyanobacteria|Rep: DNA mismatch repair protein - Lyngbya
sp. PCC 8106
Length = 563
Score = 33.1 bits (72), Expect = 6.7
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 356 LSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSAS--VSACRSARETSKTLPFNPSEAIFV 183
L VR++P ++ + C + I L+L KDL A+ +ACRSA L + +
Sbjct: 463 LWAVRTVP-EMLAQREDCHDALIELSLGKDLQAAQVATACRSAIRNGTPLSLTEMQTLLE 521
Query: 182 PWVR 171
WVR
Sbjct: 522 QWVR 525
>UniRef50_Q0KDB8 Cluster: L-Amino-acid oxidase; n=3; cellular
organisms|Rep: L-Amino-acid oxidase - Ralstonia eutropha
(strain ATCC 17699 / H16 / DSM 428 / Stanier
337)(Cupriavidus necator (strain ATCC 17699 / H16 / DSM
428 / Stanier337))
Length = 434
Score = 32.7 bits (71), Expect = 8.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 338 WTSQPISSGGWL--KNGRLSSKPTLM*RQPMDTFYVSSALVSPI 463
W + P S GGW+ + G L+ LM RQP + + A ++PI
Sbjct: 363 WANDPFSKGGWMHHRPGNLTQAAPLM-RQPHGRIHFAGADIAPI 405
>UniRef50_Q22Y97 Cluster: TPR Domain containing protein; n=1;
Tetrahymena thermophila SB210|Rep: TPR Domain containing
protein - Tetrahymena thermophila SB210
Length = 553
Score = 32.7 bits (71), Expect = 8.9
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 481 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 627
R CY + Q++ + + D TNSE+ +VNKL +SI K +K
Sbjct: 496 RAKCYVEMKQMQEAIEDYIQCYKLDPTNSEVGVIVNKLKQESILKKKDK 544
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,975,481
Number of Sequences: 1657284
Number of extensions: 14899989
Number of successful extensions: 43400
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 41801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43353
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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