Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5b12
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   2.3  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   4.1  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   5.4  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   5.4  
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    26   7.1  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   9.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   9.4  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 295 INGAVMSVVIGEYED-KNKQATTEMGACSRHSPRSGLYR 182
           +N +  S ++   ED + K+  T+ GA SRH  +SGL R
Sbjct: 713 VNASWHSNMLKRQEDLRKKKPLTDNGATSRHMLKSGLTR 751


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 79  ERYTSRRDRWSMNSQRLEQIVAELMKPISDIRRSFDTDLSAVSVVN 216
           E  T  RD   MN++ +EQ+V E M  I +I +S    +   SV++
Sbjct: 201 ESATGFRDEEIMNNEEIEQLV-ERMSRILEIAQSMGNSIREPSVLD 245


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 215 FTTLTALRSVSKLRRMSLMGFISSATICSSRC 120
           FTT   +RSV  L  M L  F+    IC S C
Sbjct: 55  FTTKKPIRSVVPLNVMLLPIFLLCRCICKSNC 86


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 544 KLNKKVFCVYMIPF-MSLIKNN*FPYVLQYFLFCIFHF 434
           K +K  F V  I   MS ++      ++QYF FCI HF
Sbjct: 125 KSSKSSFSVLDIGLPMSALQRKMMHRLVQYFAFCIDHF 162


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 247 FCLRTRL-SPLTLQLH*-LNTY-NELWREHAMPGELAPLYSHAK 369
           F LRTR  S +T   H  LN + N+ +R+   PG L   Y H K
Sbjct: 109 FNLRTRFESDMTASEHKYLNEFLNQAFRDSQKPGRLPFAYKHTK 152


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 478 FPYVLQYFLFCIFHFKLFMISQS 410
           F  ++ YF+FC+F+  L  +  S
Sbjct: 679 FSIIMIYFVFCVFYISLIPLHNS 701


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 571 YWDECIVLYKLNKKVFCVYMIPFMSLIKNN 482
           Y+  CIV  +L  +   +Y  PF +L+K +
Sbjct: 651 YFSTCIVKEQLELRAPTIYYTPFYNLLKKS 680


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,308
Number of Sequences: 5004
Number of extensions: 64718
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)