Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5b12
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79602-4|CAI79200.1|   72|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC006673-10|AAP31433.1|  361|Caenorhabditis elegans Serpentine r...    30   2.2  
Z68012-2|CAA92020.1|  408|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z70267-5|CAA94209.2|  143|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>Z79602-4|CAI79200.1|   72|Caenorhabditis elegans Hypothetical
           protein K09E9.4 protein.
          Length = 72

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 78  GTIHVPKRPVEYELTTARANRRGA 149
           G + VP+R +EY  T+ARA RR A
Sbjct: 2   GELEVPERELEYFATSARAGRRNA 25


>AC006673-10|AAP31433.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein89 protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 451 FCIFHFKLFMISQSKLVFRND*VYLNIIWRENIEAQVHRALRVPAKVHCM 302
           + +  F L +I   K V+R +  YLN+   EN++   H    + A +HC+
Sbjct: 274 YFVSEFPLGIIYFYKAVWRGNLTYLNLA--ENVKLFCHSLFTINASIHCL 321


>Z68012-2|CAA92020.1|  408|Caenorhabditis elegans Hypothetical
           protein T24D5.2 protein.
          Length = 408

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 40  FQ*CYQ*KDTIFRERYTSRRDRWSMN-SQRLEQIV 141
           FQ C++ K+T ++ +YT R D + M  S+R + I+
Sbjct: 121 FQFCHELKNTTYKNKYTIRLDAYKMTFSERDDSIL 155


>Z70267-5|CAA94209.2|  143|Caenorhabditis elegans Hypothetical
           protein K04C1.4 protein.
          Length = 143

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = -2

Query: 562 ECIVLYKLNKKVFCVYMIPFMSLIKNN*FPYVLQYFLFCIFHF 434
           +C+  +    ++     +P +S ++NN  PY ++ F+  + HF
Sbjct: 48  QCLAKFDKTARISFENFLPVLSHVRNNKIPYSMEDFIKGLSHF 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,378,622
Number of Sequences: 27780
Number of extensions: 363938
Number of successful extensions: 847
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)