Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5b11
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ...    28   1.6  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.8  
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    25   8.5  

>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 144

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 171 RPRPMRRKMVLKHRRMKAFFXNHNPTDYITKG 266
           + + +++ ++LK +  K F+ N  P +YI KG
Sbjct: 31  KAKRIKQDLILKAKTKKHFYKNVRPEEYIKKG 62


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 79  NTITEEYXTHITQWGRKKEEYFR 147
           + IT  +   I QW RK+E++FR
Sbjct: 155 SVITPAFVLFIAQWYRKEEQFFR 177


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 191 SSHWTGSSEHRLLLLRKYSSFFLPHC-VMXVXYSSVIVFRSFCCLNLRFGFY 39
           SS+  GS++   L+  +    F+ H     + +S ++VF S    N  FG Y
Sbjct: 198 SSNNVGSTKLAALVFAEIIDAFISHISYKTMVFSLILVFGSLLTSNYAFGLY 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,969
Number of Sequences: 5004
Number of extensions: 53624
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)