Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5b08
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    24   0.94 
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   5.0  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   6.7  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   6.7  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 344 FAPYFRTPYRCPLNLQ 297
           +  YFR P+RC  NLQ
Sbjct: 339 YTMYFRMPHRCHGNLQ 354


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -1

Query: 314 CPLNLQYL 291
           CP+NLQYL
Sbjct: 167 CPMNLQYL 174


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -1

Query: 647 ILLKITFIYLFIKINVIV*DIQLFPS--ELL--QGFEVYRIRCLFVPIMKSCR*FPLAIS 480
           ILL I   YL+  + VI   +QLF    E++  Q  +   ++ L   + K C    + I 
Sbjct: 213 ILLMIQLYYLYFDVIVISTFLQLFLEHYEVINRQTLDTADVKTLTTVVEKECYKMKVTID 272

Query: 479 A 477
           A
Sbjct: 273 A 273


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -1

Query: 647 ILLKITFIYLFIKINVIV*DIQLFPS--ELL--QGFEVYRIRCLFVPIMKSCR*FPLAIS 480
           ILL I   YL+  + VI   +QLF    E++  Q  +   ++ L   + K C    + I 
Sbjct: 139 ILLMIQLYYLYFDVIVISTFLQLFLEHYEVINRQTLDTADVKTLTTVVEKECYKMKVTID 198

Query: 479 A 477
           A
Sbjct: 199 A 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,002
Number of Sequences: 336
Number of extensions: 2210
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)