Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5b08
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.14
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac... 29 0.44
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 29 0.58
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 28 1.0
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 3.1
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 27 3.1
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 3.1
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.2
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 7.2
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 9.5
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 9.5
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.1 bits (67), Expect = 0.14
Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Frame = +2
Query: 224 LQKVH-----LFYDDINKIKVLEENVLKDTEDLRDTCKEYENKVQNFEXXXXXXXXXXXX 388
LQK+H L + ++++ +E + D +++ E N+E
Sbjct: 1486 LQKLHSESLSLMENIKSQLQEAKEKIQVDESTIQELDHEITASKNNYEGKLNDKDSIIRD 1545
Query: 389 XGDNVENKKMAAIGAMNLLKSIAKDKESEQLKLQAEINDKTSLLEQIDSEYDTLQILEAT 568
+N+E + +K ++ +KESE L+ + + D Q++SE ++ A+
Sbjct: 1546 LSENIEQLNNLLAEEKSAVKRLSTEKESEILQFNSRLADLEYHKSQVESELGRSKLKLAS 1605
Query: 569 QMETIE 586
E ++
Sbjct: 1606 TTEELQ 1611
>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 29.5 bits (63), Expect = 0.44
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 209 VMAEELQKVHLFYDDINKIKVLEENVLKDTEDLRDTCKEYENKVQN 346
+++ +Q Y D++ I VL++ + +T L + K YE QN
Sbjct: 87 LLSSNMQLEQQLYSDLDHINVLQQELKVETARLENEQKSYEEMKQN 132
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 29.1 bits (62), Expect = 0.58
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = -1
Query: 374 LTASL*FFQNFAPYFRTPYRCPLN----LQYLSKHSPQEPL 264
LT+++ + N+ Y ++PY+ P N +QY HSPQ +
Sbjct: 175 LTSNVAYPPNYNNYLKSPYQQPTNFPPEIQYNYSHSPQHSI 215
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 266 KVLEENVLKDTEDLRDTCKEYENKVQNF 349
K L +N D L TC +Y N VQNF
Sbjct: 165 KQLLQNADTDLSKLEKTCVQYMNSVQNF 192
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 434 MNLLKSIAKDKESEQLKLQAEINDKTSLLEQ 526
+ LLK + K E + K+Q+E+ D T L E+
Sbjct: 1252 IELLKRVVKQAEEFKNKMQSEVCDPTQLSEK 1282
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 209 VMAEELQKVHLFYDDIN-KIKVLEENVLKDTEDLRDTCKEYENKVQNFE 352
V ++++ L +D ++ KI+ ++ K EDLR+ +YE ++ FE
Sbjct: 138 VKEKKMENRRLVFDALSTKIQKAKKEESKLEEDLRNARAKYEESLEEFE 186
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/107 (23%), Positives = 40/107 (37%)
Frame = +2
Query: 218 EELQKVHLFYDDINKIKVLEENVLKDTEDLRDTCKEYENKVQNFEXXXXXXXXXXXXXGD 397
EEL K DI K E V ++ L T N +Q +
Sbjct: 549 EELAKAKQISLDIETNKAQTEQVNREYSILEATL----NALQKQNKQKGEVLEQVVAESE 604
Query: 398 NVENKKMAAIGAMNLLKSIAKDKESEQLKLQAEINDKTSLLEQIDSE 538
+N ++ ++ LKS DKE +L ++++ T L +D E
Sbjct: 605 AAKNMVESSNASIQQLKSEVADKEQTLAQLHLQLDEMTQRLVSLDEE 651
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 440 LLKSIAKDKESEQLKLQAEINDKTSLLEQIDSEYDTLQ 553
L I + +EQLKL AE+ S L Q+ D LQ
Sbjct: 486 LAAPIPQVASAEQLKLAAEVPKLESQLSQVKKSNDDLQ 523
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +2
Query: 440 LLKSIAKDKESEQLKLQAEINDKTSLLEQIDSEYDTLQILEATQMETIEYLTQL 601
LL+ I+ + +S+ LKL+ E+ND ++++ Y T I +A ++E L L
Sbjct: 141 LLREISGNHKSKILKLEEELNDLKHSMKEMQL-YMTKIIDKAMNNASLENLFSL 193
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 434 MNLLKSIAKDKESEQLKLQAEINDKTSLLEQIDSEYDTLQ 553
+N S ++ ++E+ KLQ ++N+ SLL + + TL+
Sbjct: 636 LNAQLSQLENLQNEERKLQEKVNEHESLLSRTNDILSTLR 675
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 9.5
Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Frame = +2
Query: 245 YDDINKIKVLEENVLKDTEDLRDTCKEYENKVQNFEXXXXXXXXXXXXXGDNVENKKMAA 424
+ I K K+ E + L+ T ++ N + E ++ +A
Sbjct: 205 FSSIQKPKLKAEGSTLKGQALKKTLEDTWNNLTEEEKKPYHEGLLAAREKAREARRRRSA 264
Query: 425 IGAMNLLKSIAKDKESEQLKLQAEINDKTSL--LEQIDSEYDTLQILEAT 568
+ L K AK+K+ ++ + Q ++DK + +E+ E D + E T
Sbjct: 265 QNSAKLEKEKAKEKQKDKDQEQDTVSDKNQIDEIEKGQKEVDEEPVSEPT 314
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 9.5
Identities = 21/118 (17%), Positives = 45/118 (38%)
Frame = +2
Query: 212 MAEELQKVHLFYDDINKIKVLEENVLKDTEDLRDTCKEYENKVQNFEXXXXXXXXXXXXX 391
+ EL+K + + ++ + + D L + + ++F+
Sbjct: 731 LLSELEKSKSLNNSLAALESKNKKLENDLNLLTEKLNKKNADTESFKNTIREAELSKKAL 790
Query: 392 GDNVENKKMAAIGAMNLLKSIAKDKESEQLKLQAEINDKTSLLEQIDSEYDTLQILEA 565
DN+ NK+ N L + + Q +L + N +L E+I + D L +E+
Sbjct: 791 NDNLGNKENIISDLKNKLSEESTRLQELQSQLNQDKNQIETLNERISAAADELSSMES 848
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,185
Number of Sequences: 5004
Number of extensions: 34832
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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