Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5b01
         (462 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0361 + 28285994-28286063,28286341-28286393,28286528-282865...    29   1.8  
03_05_0723 - 27143559-27143648,27144020-27144192,27144284-271443...    28   4.2  
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118...    27   5.6  
12_02_1257 - 27372420-27372724,27373486-27373662,27373862-27373886     27   7.3  
10_04_0020 + 7644329-7644666,7644960-7645146,7645311-7645365,764...    27   7.3  
04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547     27   7.3  
01_01_0887 + 6978869-6979053,6979183-6979558,6979651-6979734,697...    27   7.3  
08_02_1555 + 27849691-27849840,27850851-27850973                       27   9.7  
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207           27   9.7  

>02_05_0361 +
           28285994-28286063,28286341-28286393,28286528-28286588,
           28286825-28287912
          Length = 423

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -3

Query: 412 NSYFSVAVDSRRYVLPIISQLSACYLPLPFFAYSQKTFELFCKRSTFSIVIDV 254
           +S  + ++   +Y+L  +  L A        +  Q TFE   KR TFS+V+++
Sbjct: 239 DSQGTTSISHGKYILGFLLTLGASATYSLILSLMQVTFEKVIKRETFSVVLNM 291


>03_05_0723 -
           27143559-27143648,27144020-27144192,27144284-27144364,
           27144556-27144609,27146556-27146574
          Length = 138

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 176 CGKQEMDLMNCIEAYGLGRGIKKCKGYIDDYGECR 280
           C        +CI  YG    I KC+ Y+D   ECR
Sbjct: 100 CSIHSKAFQDCINNYG--SDISKCQFYLDMLNECR 132


>01_05_0740 -
           24809951-24810394,24810622-24810700,24811651-24811809,
           24812083-24812246,24812436-24812624,24813151-24813408,
           24813463-24813951,24814062-24814262,24814368-24814639,
           24814661-24814685,24814776-24814937,24815065-24815104,
           24815244-24815353,24815812-24815898,24816013-24816507
          Length = 1057

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 109 SILPFTVHGYYGWYDRFSDFGPLWETRNGSDELHRSLW 222
           S LP   +GYY   D   +FG  +   N  D +H++ W
Sbjct: 729 SRLPLLNNGYYR--DILGEFGAFFALANRIDRIHKNSW 764


>12_02_1257 - 27372420-27372724,27373486-27373662,27373862-27373886
          Length = 168

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +2

Query: 164 ILGRCGKQEMDLMNCIEAYGLGRGIKKCKGYIDDYGECR 280
           +L  CG  +     C+   G+   + +C+ Y+D   +CR
Sbjct: 114 MLDACGAHKKAFQECVAQQGIH--VSRCQPYLDMLNDCR 150


>10_04_0020 +
           7644329-7644666,7644960-7645146,7645311-7645365,
           7645390-7645438,7645984-7646200
          Length = 281

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 255 TSMTMENVERLQNNSNVFWLYAKNGRGK 338
           T + +E+  RL+NN N  WL  K  RG+
Sbjct: 199 TPVDVEHYRRLRNNHNWAWLMDKCWRGR 226


>04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547
          Length = 751

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 391 VDSRRYVLPIISQLSACYLPLPFFAYSQKTFELFCKRSTFSIVIDV 254
           V   +Y+L  +  L A        A  Q TFE   K+ TFS V+++
Sbjct: 199 VSGGKYLLGFVLTLGASCTYSLILALMQLTFETIIKKHTFSAVLNM 244


>01_01_0887 +
           6978869-6979053,6979183-6979558,6979651-6979734,
           6979838-6979903,6980938-6981007,6981333-6981718,
           6982114-6982154,6982661-6982757
          Length = 434

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 94  HGHYFSI--LPFTVHGYYGWYDRFSDFGPLWETRNGSDELHRS 216
           HGHY S+  LPF  + YY  +    D G L E R   D   R+
Sbjct: 360 HGHYDSVSSLPFEFYHYY--HGSSYDMGTLIEVRRMWDSFIRA 400


>08_02_1555 + 27849691-27849840,27850851-27850973
          Length = 90

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 170 GRCGKQEMDLMNCIEAYGLGRGIKKCKGYIDDYGECRTLTKQLKRFLAIRKERQRQI 340
           GRC    +D   C+      R    C    +DY EC   +K+ +R   I KE QR++
Sbjct: 12  GRCYDFWLDFSECMSRC---RQPTDCGLLREDYLECLHHSKEFQRRNRIYKEEQRKL 65


>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
          Length = 153

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 197 LMNCIEAYGLGRGIKKCKGYIDDYGECRTLTKQ 295
           +M C+E        KKCK  ID Y EC    K+
Sbjct: 80  VMKCLE--NTKNDFKKCKTLIDKYEECSNPPKE 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,677,880
Number of Sequences: 37544
Number of extensions: 200660
Number of successful extensions: 451
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)