Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5b01
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024811-2|AAF60773.1|  121|Caenorhabditis elegans Hypothetical ...    52   2e-07
U64599-2|ABB88205.1|  420|Caenorhabditis elegans Unidentified vi...    29   1.2  
U64599-1|AAB04560.3|  426|Caenorhabditis elegans Unidentified vi...    29   1.2  
Z73976-7|CAE17945.1|   74|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AC024811-2|AAF60773.1|  121|Caenorhabditis elegans Hypothetical
           protein Y54E10BL.5 protein.
          Length = 121

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 39/100 (39%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
 Frame = +2

Query: 101 TISPFFRSPFTDITGGMIDFQILGR-CGKQEMDLMNCIEAYGLGRGIKKCKGYIDDYGEC 277
           ++SP  ++P TD     +  Q  GR CG  E     C+EAYG   G K C     D+ EC
Sbjct: 13  SLSPIVKAPITDTLSVPLSQQ--GRICGFFESQFYRCMEAYGAKMGRKYCDLEHRDFQEC 70

Query: 278 RTLTKQLKRFLAIRKERQRQIACGKLTDDRKYVSPRVDSY 397
            T  KQ KR  AIR++R     C KL  D K   P VD++
Sbjct: 71  VTGDKQKKRADAIREQR-----C-KLFLDGKIAKPYVDNH 104


>U64599-2|ABB88205.1|  420|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 6, isoform b
           protein.
          Length = 420

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 109 SILPFTVHGYYGWYDRFSDFGPLWETRNGSDELHRSLWPRSRYQEV 246
           S++ F + G   +Y  +  F  L E   GS  LHR+   RS YQ V
Sbjct: 188 SVMIFILPGLVIFYCYYHVFCKLREAAKGSRRLHRNKRSRSSYQRV 233


>U64599-1|AAB04560.3|  426|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 6, isoform a
           protein.
          Length = 426

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 109 SILPFTVHGYYGWYDRFSDFGPLWETRNGSDELHRSLWPRSRYQEV 246
           S++ F + G   +Y  +  F  L E   GS  LHR+   RS YQ V
Sbjct: 188 SVMIFILPGLVIFYCYYHVFCKLREAAKGSRRLHRNKRSRSSYQRV 233


>Z73976-7|CAE17945.1|   74|Caenorhabditis elegans Hypothetical
           protein T07C12.13 protein.
          Length = 74

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 91  YHGHYFSILPFTVHGYYGWYDRFSDFGPLWETR 189
           Y+G+Y     +  +GYYG   R + FGP  +T+
Sbjct: 44  YNGYYGGAYGYGEYGYYG--KREAGFGPTQQTK 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,809,117
Number of Sequences: 27780
Number of extensions: 192244
Number of successful extensions: 381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)