Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5a15
         (716 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   2.5  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.7  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   7.6  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 102 HTLNFLFKCLHYLLLT 149
           HTL  LF CL +L++T
Sbjct: 270 HTLLILFSCLLHLVVT 285


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 15/63 (23%), Positives = 25/63 (39%)
 Frame = +1

Query: 190 FLFCCLVFYNFATYHPTME*APLHKTTFIKKYYCFQSYLKQHSEFRSINVWKTWSSDNED 369
           F FCC++F+ +  +  T      + TT    Y   Q Y +Q         W+  +   E 
Sbjct: 13  FSFCCILFFIYLYWQQTS-----NLTTSKLLYTYRQPYPRQKKSHPPQWTWQCINQRCER 67

Query: 370 HHV 378
            H+
Sbjct: 68  RHI 70


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 222  CHVPSDYGMSS 254
            CHV +DYG  S
Sbjct: 1376 CHVENDYGQDS 1386


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 701 LCKKPKYNSGVLPSMHTNGFIFPEW 627
           L   P  +   LPS+  +G   P+W
Sbjct: 190 LVNAPSVSPASLPSISPSGGFLPKW 214


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,113
Number of Sequences: 336
Number of extensions: 3573
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)