Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5a15
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    27   2.0  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   6.2  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   8.2  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   8.2  

>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 10  QQCVS*AMNSWLLSKTL*ITSQVVNSLMN 96
           QQC     NSWL S+     +QV NS++N
Sbjct: 152 QQCAQEFCNSWLQSRAHKNQNQVTNSVVN 180


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
            Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 292  FQSYLKQHSEFRSINVWKTWSSDNEDHHVVCYG 390
            F +Y+K  S     N WK W+ D++++    +G
Sbjct: 948  FVNYIKYDSLGLISNAWKAWAHDHDNNPEGIFG 980


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 155 TTSK*QVMKAFEQKI*GMP*FIK 87
           TTSK +V K+F +K+ G P  +K
Sbjct: 98  TTSKTRVFKSFNEKLKGKPQLVK 120


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 172 SLENISFLFCCLVFYNFATYHPT 240
           S EN+ F   CL++    TYH T
Sbjct: 96  SFENLIFEHACLIYRLACTYHTT 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,563
Number of Sequences: 5004
Number of extensions: 56882
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)