Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5a15
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381...    30   1.6  
03_06_0616 - 35121755-35121913,35121994-35122109,35122198-351223...    29   3.7  
11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152           29   4.9  

>03_05_0124 +
           21034963-21035181,21035618-21037466,21037485-21038194,
           21038426-21038470,21038557-21038745
          Length = 1003

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 382 CYGKKIHYHKFMTLNNESITQYKHLETMD 468
           C+ K   +H  +T++NE  + ++HL T+D
Sbjct: 546 CFSKLFSHHINLTIDNELWSSFRHLRTLD 574


>03_06_0616 -
           35121755-35121913,35121994-35122109,35122198-35122342,
           35122475-35122646,35123225-35123289
          Length = 218

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 334 NVWKTWSSDNEDHHVVCYGKKIHYHKFMTLNNESITQYKHLET 462
           N    W +D  ++HVV    K++YH +M  N ++  ++   ET
Sbjct: 34  NEQDNWDNDRTENHVVENTTKLNYHSYM--NRQTRAKWSKSET 74


>11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152
          Length = 1044

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 218 ILPRTIRLWNELLSTKQHLLKNI 286
           +LPRT+R   +LL T QHL + +
Sbjct: 177 LLPRTVRATKKLLQTNQHLAQEL 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,781,082
Number of Sequences: 37544
Number of extensions: 297183
Number of successful extensions: 586
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)